miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24676 3' -53.5 NC_005264.1 + 108752 1.13 0.003267
Target:  5'- gCGGUUCGCGCAGGAACGGUUCUUGGCg -3'
miRNA:   3'- -GCCAAGCGCGUCCUUGCCAAGAACCG- -5'
24676 3' -53.5 NC_005264.1 + 84895 0.73 0.745104
Target:  5'- gCGGgcCGCGCAGGA-CGGgag--GGCg -3'
miRNA:   3'- -GCCaaGCGCGUCCUuGCCaagaaCCG- -5'
24676 3' -53.5 NC_005264.1 + 28276 0.71 0.818998
Target:  5'- -uGUUgGCGCAGGucguGACGGgguaCUUGGCc -3'
miRNA:   3'- gcCAAgCGCGUCC----UUGCCaa--GAACCG- -5'
24676 3' -53.5 NC_005264.1 + 105831 0.7 0.852118
Target:  5'- uGGUaUCG-GC-GGAACGGUUCUcgugcaUGGCc -3'
miRNA:   3'- gCCA-AGCgCGuCCUUGCCAAGA------ACCG- -5'
24676 3' -53.5 NC_005264.1 + 21718 0.7 0.852118
Target:  5'- cCGGccgugCGCGCAGGAGuagaGG-UUUUGGCc -3'
miRNA:   3'- -GCCaa---GCGCGUCCUUg---CCaAGAACCG- -5'
24676 3' -53.5 NC_005264.1 + 60626 0.7 0.859914
Target:  5'- cCGGcUCGCGCAGGAGCaGcagCUUGa- -3'
miRNA:   3'- -GCCaAGCGCGUCCUUGcCaa-GAACcg -5'
24676 3' -53.5 NC_005264.1 + 4260 0.7 0.867501
Target:  5'- cCGGcuugcCGCGCGGGAaccGCGGggCggcGGCa -3'
miRNA:   3'- -GCCaa---GCGCGUCCU---UGCCaaGaa-CCG- -5'
24676 3' -53.5 NC_005264.1 + 123287 0.7 0.867501
Target:  5'- cCGGcuugcCGCGCGGGAaccGCGGggCggcGGCa -3'
miRNA:   3'- -GCCaa---GCGCGUCCU---UGCCaaGaa-CCG- -5'
24676 3' -53.5 NC_005264.1 + 31761 0.69 0.888963
Target:  5'- uGGcUCGCaCcGGGAUGGUUCgcgGGCg -3'
miRNA:   3'- gCCaAGCGcGuCCUUGCCAAGaa-CCG- -5'
24676 3' -53.5 NC_005264.1 + 69954 0.69 0.888963
Target:  5'- gCGGUUUGCGUcGGAagACGcuacCUUGGCg -3'
miRNA:   3'- -GCCAAGCGCGuCCU--UGCcaa-GAACCG- -5'
24676 3' -53.5 NC_005264.1 + 150787 0.69 0.888963
Target:  5'- uGGcUCGCaCcGGGAUGGUUCgcgGGCg -3'
miRNA:   3'- gCCaAGCGcGuCCUUGCCAAGaa-CCG- -5'
24676 3' -53.5 NC_005264.1 + 58625 0.69 0.902138
Target:  5'- uGGcugCGCGUAGGAuaACGGUUuaCUgugaagGGCg -3'
miRNA:   3'- gCCaa-GCGCGUCCU--UGCCAA--GAa-----CCG- -5'
24676 3' -53.5 NC_005264.1 + 5015 0.68 0.920134
Target:  5'- gCGGUUUGCGCAGaGGAggccacgaGGUUCcgcgucgugGGCg -3'
miRNA:   3'- -GCCAAGCGCGUC-CUUg-------CCAAGaa-------CCG- -5'
24676 3' -53.5 NC_005264.1 + 120721 0.68 0.925653
Target:  5'- gCGG-UCGgGCGGaGGACGGUgcc-GGCg -3'
miRNA:   3'- -GCCaAGCgCGUC-CUUGCCAagaaCCG- -5'
24676 3' -53.5 NC_005264.1 + 94803 0.68 0.935968
Target:  5'- ---gUCGgGCAGGaAGCGGUUauccgcucUUUGGCg -3'
miRNA:   3'- gccaAGCgCGUCC-UUGCCAA--------GAACCG- -5'
24676 3' -53.5 NC_005264.1 + 132590 0.68 0.945323
Target:  5'- gCGGcgCGgGCGGGAcCGGggaagGGCg -3'
miRNA:   3'- -GCCaaGCgCGUCCUuGCCaagaaCCG- -5'
24676 3' -53.5 NC_005264.1 + 13563 0.68 0.945323
Target:  5'- gCGGcgCGgGCGGGAcCGGggaagGGCg -3'
miRNA:   3'- -GCCaaGCgCGUCCUuGCCaagaaCCG- -5'
24676 3' -53.5 NC_005264.1 + 13278 0.67 0.949645
Target:  5'- gGGUUCGCGcCAGcGAGgCGGgUCgUGGa -3'
miRNA:   3'- gCCAAGCGC-GUC-CUU-GCCaAGaACCg -5'
24676 3' -53.5 NC_005264.1 + 132305 0.67 0.949645
Target:  5'- gGGUUCGCGcCAGcGAGgCGGgUCgUGGa -3'
miRNA:   3'- gCCAAGCGC-GUC-CUU-GCCaAGaACCg -5'
24676 3' -53.5 NC_005264.1 + 57567 0.67 0.953733
Target:  5'- aGGUUUuCGCA-GAGCGGUUUcaUGGCc -3'
miRNA:   3'- gCCAAGcGCGUcCUUGCCAAGa-ACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.