miRNA display CGI


Results 61 - 80 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24676 5' -54.9 NC_005264.1 + 134789 0.7 0.805037
Target:  5'- ---cCGCGCGCuuuuacccgGCGUcGCGCGCGcCGg -3'
miRNA:   3'- cuuaGCGCGUG---------CGCAaCGCGUGCaGC- -5'
24676 5' -54.9 NC_005264.1 + 25200 0.7 0.813813
Target:  5'- ---cCGCGUACGUGUUGgCGCACa--- -3'
miRNA:   3'- cuuaGCGCGUGCGCAAC-GCGUGcagc -5'
24676 5' -54.9 NC_005264.1 + 27934 0.7 0.805037
Target:  5'- ----gGUGUugGCGUUcUGCGCGUCGg -3'
miRNA:   3'- cuuagCGCGugCGCAAcGCGUGCAGC- -5'
24676 5' -54.9 NC_005264.1 + 23280 0.71 0.768461
Target:  5'- --uUCGCGCGCGCGUgcagcgaGCGCAaacaUCGc -3'
miRNA:   3'- cuuAGCGCGUGCGCAa------CGCGUgc--AGC- -5'
24676 5' -54.9 NC_005264.1 + 112948 0.71 0.758992
Target:  5'- ---gCGCGCaACGCuUUGCGCAUGUUu -3'
miRNA:   3'- cuuaGCGCG-UGCGcAACGCGUGCAGc -5'
24676 5' -54.9 NC_005264.1 + 32987 0.71 0.758992
Target:  5'- --cUCGCGCAuauCGCcaucggGCGCugGUCGg -3'
miRNA:   3'- cuuAGCGCGU---GCGcaa---CGCGugCAGC- -5'
24676 5' -54.9 NC_005264.1 + 31709 0.71 0.749411
Target:  5'- aGGUCGCGCGCgggGCGUacuUGUuCGCGUCGu -3'
miRNA:   3'- cUUAGCGCGUG---CGCA---ACGcGUGCAGC- -5'
24676 5' -54.9 NC_005264.1 + 60704 0.71 0.729949
Target:  5'- gGAAUCGCGCuuagaGCGUauuuccugGCGCAUGUgGa -3'
miRNA:   3'- -CUUAGCGCGug---CGCAa-------CGCGUGCAgC- -5'
24676 5' -54.9 NC_005264.1 + 31045 0.71 0.739727
Target:  5'- cGGUCGUGCGgcUGCGUUGCGgACGgcaggCGa -3'
miRNA:   3'- cUUAGCGCGU--GCGCAACGCgUGCa----GC- -5'
24676 5' -54.9 NC_005264.1 + 66521 0.71 0.737779
Target:  5'- cGAG-CGUGCccugacgacgacCGCGUUGCGgGCGUCGg -3'
miRNA:   3'- -CUUaGCGCGu-----------GCGCAACGCgUGCAGC- -5'
24676 5' -54.9 NC_005264.1 + 6157 0.71 0.749411
Target:  5'- -cGUCGCGCAuCGCGUgcacgaugugGgGCACGcCGg -3'
miRNA:   3'- cuUAGCGCGU-GCGCAa---------CgCGUGCaGC- -5'
24676 5' -54.9 NC_005264.1 + 47680 0.71 0.739727
Target:  5'- ---aCGCGUugGCGguuuccgcuuUUGCGC-CGUCGa -3'
miRNA:   3'- cuuaGCGCGugCGC----------AACGCGuGCAGC- -5'
24676 5' -54.9 NC_005264.1 + 150072 0.71 0.739727
Target:  5'- cGGUCGUGCGgcUGCGUUGCGgACGgcaggCGa -3'
miRNA:   3'- cUUAGCGCGU--GCGCAACGCgUGCa----GC- -5'
24676 5' -54.9 NC_005264.1 + 125184 0.71 0.749411
Target:  5'- -cGUCGCGCAuCGCGUgcacgaugugGgGCACGcCGg -3'
miRNA:   3'- cuUAGCGCGU-GCGCAa---------CgCGUGCaGC- -5'
24676 5' -54.9 NC_005264.1 + 150735 0.71 0.749411
Target:  5'- aGGUCGCGCGCgggGCGUacuUGUuCGCGUCGu -3'
miRNA:   3'- cUUAGCGCGUG---CGCA---ACGcGUGCAGC- -5'
24676 5' -54.9 NC_005264.1 + 152014 0.71 0.758992
Target:  5'- --cUCGCGCAuauCGCcaucggGCGCugGUCGg -3'
miRNA:   3'- cuuAGCGCGU---GCGcaa---CGCGugCAGC- -5'
24676 5' -54.9 NC_005264.1 + 156686 0.71 0.739727
Target:  5'- ---aCGUGCACGCGaUGCGCgACGggCGc -3'
miRNA:   3'- cuuaGCGCGUGCGCaACGCG-UGCa-GC- -5'
24676 5' -54.9 NC_005264.1 + 32917 0.72 0.669833
Target:  5'- cGAUCGCGCAgggguCGCGggGCGcCGCGUg- -3'
miRNA:   3'- cUUAGCGCGU-----GCGCaaCGC-GUGCAgc -5'
24676 5' -54.9 NC_005264.1 + 90822 0.72 0.690088
Target:  5'- --cUCGCGUgugGCGgccGCGCACGUCGa -3'
miRNA:   3'- cuuAGCGCGug-CGCaa-CGCGUGCAGC- -5'
24676 5' -54.9 NC_005264.1 + 68431 0.72 0.67998
Target:  5'- cGAUCGCGCAguccgcgcCGCGgucUGCGCGCGg-- -3'
miRNA:   3'- cUUAGCGCGU--------GCGCa--ACGCGUGCagc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.