miRNA display CGI


Results 41 - 60 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24676 5' -54.9 NC_005264.1 + 104360 0.69 0.83912
Target:  5'- ---gCGCGCAUGCGUuaaUGuCGCGCGg-- -3'
miRNA:   3'- cuuaGCGCGUGCGCA---AC-GCGUGCagc -5'
24676 5' -54.9 NC_005264.1 + 66608 0.69 0.830862
Target:  5'- ---cUGCGC-CGCGUUGCcgGCGcCGUCGc -3'
miRNA:   3'- cuuaGCGCGuGCGCAACG--CGU-GCAGC- -5'
24676 5' -54.9 NC_005264.1 + 82345 0.69 0.83912
Target:  5'- uGAGUaGaCGCACGUGUgccagGCagGCGCGUCGa -3'
miRNA:   3'- -CUUAgC-GCGUGCGCAa----CG--CGUGCAGC- -5'
24676 5' -54.9 NC_005264.1 + 145113 0.69 0.830862
Target:  5'- aGGUUGCGC-CGCGgcGCGCAgGUa- -3'
miRNA:   3'- cUUAGCGCGuGCGCaaCGCGUgCAgc -5'
24676 5' -54.9 NC_005264.1 + 147696 0.69 0.822424
Target:  5'- -cAUCGcCGCACGCGaUUGCcCGUGUCGg -3'
miRNA:   3'- cuUAGC-GCGUGCGC-AACGcGUGCAGC- -5'
24676 5' -54.9 NC_005264.1 + 50810 0.69 0.847191
Target:  5'- cGGAUCgGCGCGCGCGcagguUUGCGUguagACGUg- -3'
miRNA:   3'- -CUUAG-CGCGUGCGC-----AACGCG----UGCAgc -5'
24676 5' -54.9 NC_005264.1 + 133557 0.68 0.8979
Target:  5'- -cGUCGagGCACGCGcccGCGCACaGUCc -3'
miRNA:   3'- cuUAGCg-CGUGCGCaa-CGCGUG-CAGc -5'
24676 5' -54.9 NC_005264.1 + 69662 0.68 0.877464
Target:  5'- aGGUCGgGCACGCG--GCGCugGg-- -3'
miRNA:   3'- cUUAGCgCGUGCGCaaCGCGugCagc -5'
24676 5' -54.9 NC_005264.1 + 30630 0.68 0.891313
Target:  5'- cGGAUC-CGCGCGCagcGCGUAgGUCGu -3'
miRNA:   3'- -CUUAGcGCGUGCGcaaCGCGUgCAGC- -5'
24676 5' -54.9 NC_005264.1 + 54051 0.68 0.891313
Target:  5'- cGAcgUGCGCaACGCG-UGCGCGauUCGc -3'
miRNA:   3'- -CUuaGCGCG-UGCGCaACGCGUgcAGC- -5'
24676 5' -54.9 NC_005264.1 + 94481 0.68 0.893975
Target:  5'- aGGUCGUGCGCaccaggaacaugcucGCGUUaGUGCAgcCGUCGg -3'
miRNA:   3'- cUUAGCGCGUG---------------CGCAA-CGCGU--GCAGC- -5'
24676 5' -54.9 NC_005264.1 + 87126 0.68 0.8979
Target:  5'- ----gGCGCcCGCGggGCGCACcaGUCu -3'
miRNA:   3'- cuuagCGCGuGCGCaaCGCGUG--CAGc -5'
24676 5' -54.9 NC_005264.1 + 42056 0.68 0.891313
Target:  5'- cAAUCGCGUugccCGCGgcGCGUGgCGUCa -3'
miRNA:   3'- cUUAGCGCGu---GCGCaaCGCGU-GCAGc -5'
24676 5' -54.9 NC_005264.1 + 149657 0.68 0.891313
Target:  5'- cGGAUC-CGCGCGCagcGCGUAgGUCGu -3'
miRNA:   3'- -CUUAGcGCGUGCGcaaCGCGUgCAGC- -5'
24676 5' -54.9 NC_005264.1 + 56925 0.67 0.904256
Target:  5'- ----gGCGUACGUGcgugGCGCACGgggCGa -3'
miRNA:   3'- cuuagCGCGUGCGCaa--CGCGUGCa--GC- -5'
24676 5' -54.9 NC_005264.1 + 136879 0.67 0.904256
Target:  5'- cAAUCGUGCACaCGUccGCGC-CGUCc -3'
miRNA:   3'- cUUAGCGCGUGcGCAa-CGCGuGCAGc -5'
24676 5' -54.9 NC_005264.1 + 29659 0.67 0.932502
Target:  5'- cGGUC-CGC-CGCGUUGCGUagcaucagggaGCGUCc -3'
miRNA:   3'- cUUAGcGCGuGCGCAACGCG-----------UGCAGc -5'
24676 5' -54.9 NC_005264.1 + 122580 0.67 0.932502
Target:  5'- ---gCGcCGCAcCGCGUUGggguacCGCACGUCc -3'
miRNA:   3'- cuuaGC-GCGU-GCGCAAC------GCGUGCAGc -5'
24676 5' -54.9 NC_005264.1 + 59014 0.67 0.932502
Target:  5'- aGAAUCGCGgAgGCaGgcGCGuCAgGUCGg -3'
miRNA:   3'- -CUUAGCGCgUgCG-CaaCGC-GUgCAGC- -5'
24676 5' -54.9 NC_005264.1 + 154917 0.67 0.929426
Target:  5'- cGAcgCGUggacGCGCGCGUUGCuagccagagcgugggGgACGUCGu -3'
miRNA:   3'- -CUuaGCG----CGUGCGCAACG---------------CgUGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.