miRNA display CGI


Results 61 - 80 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24676 5' -54.9 NC_005264.1 + 100919 0.66 0.946599
Target:  5'- --uUCGCGCAaGCGgcgGCGCcCGUgCGc -3'
miRNA:   3'- cuuAGCGCGUgCGCaa-CGCGuGCA-GC- -5'
24676 5' -54.9 NC_005264.1 + 103015 0.67 0.921916
Target:  5'- ---gCGCGCugGCGUacGCGacccuCACGUCu -3'
miRNA:   3'- cuuaGCGCGugCGCAa-CGC-----GUGCAGc -5'
24676 5' -54.9 NC_005264.1 + 104360 0.69 0.83912
Target:  5'- ---gCGCGCAUGCGUuaaUGuCGCGCGg-- -3'
miRNA:   3'- cuuaGCGCGUGCGCA---AC-GCGUGCagc -5'
24676 5' -54.9 NC_005264.1 + 108786 1.1 0.003619
Target:  5'- cGAAUCGCGCACGCGUUGCGCACGUCGg -3'
miRNA:   3'- -CUUAGCGCGUGCGCAACGCGUGCAGC- -5'
24676 5' -54.9 NC_005264.1 + 109169 0.79 0.350097
Target:  5'- aGAUCGCGCAUGCG--GCGUAUGUCa -3'
miRNA:   3'- cUUAGCGCGUGCGCaaCGCGUGCAGc -5'
24676 5' -54.9 NC_005264.1 + 109264 0.75 0.528153
Target:  5'- --cUCGC-CACGCGUcGgGCGCGUCGu -3'
miRNA:   3'- cuuAGCGcGUGCGCAaCgCGUGCAGC- -5'
24676 5' -54.9 NC_005264.1 + 109371 0.67 0.916266
Target:  5'- ---gCGaUGUGCGCGUUGCGCcuagucaagucgGCGUUGg -3'
miRNA:   3'- cuuaGC-GCGUGCGCAACGCG------------UGCAGC- -5'
24676 5' -54.9 NC_005264.1 + 109971 0.77 0.407516
Target:  5'- --cUCGCuCGCGCG-UGUGCACGUCGu -3'
miRNA:   3'- cuuAGCGcGUGCGCaACGCGUGCAGC- -5'
24676 5' -54.9 NC_005264.1 + 111246 0.66 0.95083
Target:  5'- -cGUCGC-UGCGCGUaUGCGCGggaaacucgauCGUCGg -3'
miRNA:   3'- cuUAGCGcGUGCGCA-ACGCGU-----------GCAGC- -5'
24676 5' -54.9 NC_005264.1 + 112948 0.71 0.758992
Target:  5'- ---gCGCGCaACGCuUUGCGCAUGUUu -3'
miRNA:   3'- cuuaGCGCG-UGCGcAACGCGUGCAGc -5'
24676 5' -54.9 NC_005264.1 + 117165 0.67 0.921362
Target:  5'- gGGAUCGCGCcacgugcuucacuGCGCuugGCGCcuagccgccGCGUCGu -3'
miRNA:   3'- -CUUAGCGCG-------------UGCGcaaCGCG---------UGCAGC- -5'
24676 5' -54.9 NC_005264.1 + 121172 0.66 0.942136
Target:  5'- cGGUC-CGCAC-UGaUGCGCACGUCc -3'
miRNA:   3'- cUUAGcGCGUGcGCaACGCGUGCAGc -5'
24676 5' -54.9 NC_005264.1 + 122580 0.67 0.932502
Target:  5'- ---gCGcCGCAcCGCGUUGggguacCGCACGUCc -3'
miRNA:   3'- cuuaGC-GCGU-GCGCAAC------GCGUGCAGc -5'
24676 5' -54.9 NC_005264.1 + 125184 0.71 0.749411
Target:  5'- -cGUCGCGCAuCGCGUgcacgaugugGgGCACGcCGg -3'
miRNA:   3'- cuUAGCGCGU-GCGCAa---------CgCGUGCaGC- -5'
24676 5' -54.9 NC_005264.1 + 126304 0.66 0.941215
Target:  5'- --uUCGgGCGCGCGgccgauggcuccUGCGCccgccuCGUCGa -3'
miRNA:   3'- cuuAGCgCGUGCGCa-----------ACGCGu-----GCAGC- -5'
24676 5' -54.9 NC_005264.1 + 128574 0.67 0.916266
Target:  5'- cGGAgCGCaGCACGCGgauuaccgcGCGCACGaggCGg -3'
miRNA:   3'- -CUUaGCG-CGUGCGCaa-------CGCGUGCa--GC- -5'
24676 5' -54.9 NC_005264.1 + 130550 0.72 0.669833
Target:  5'- -cGUCGCgGCGCGUGUgcuacGCGCAgGUCu -3'
miRNA:   3'- cuUAGCG-CGUGCGCAa----CGCGUgCAGc -5'
24676 5' -54.9 NC_005264.1 + 131601 0.72 0.700148
Target:  5'- gGAGggaGCgGCGCGCGUggGCGCGCG-CGg -3'
miRNA:   3'- -CUUag-CG-CGUGCGCAa-CGCGUGCaGC- -5'
24676 5' -54.9 NC_005264.1 + 133557 0.68 0.8979
Target:  5'- -cGUCGagGCACGCGcccGCGCACaGUCc -3'
miRNA:   3'- cuUAGCg-CGUGCGCaa-CGCGUG-CAGc -5'
24676 5' -54.9 NC_005264.1 + 134789 0.7 0.805037
Target:  5'- ---cCGCGCGCuuuuacccgGCGUcGCGCGCGcCGg -3'
miRNA:   3'- cuuaGCGCGUG---------CGCAaCGCGUGCaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.