miRNA display CGI


Results 41 - 60 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24676 5' -54.9 NC_005264.1 + 90822 0.72 0.690088
Target:  5'- --cUCGCGUgugGCGgccGCGCACGUCGa -3'
miRNA:   3'- cuuAGCGCGug-CGCaa-CGCGUGCAGC- -5'
24676 5' -54.9 NC_005264.1 + 89010 0.74 0.578114
Target:  5'- aGAUCGCGCA-GCuc-GCGCAUGUCGg -3'
miRNA:   3'- cUUAGCGCGUgCGcaaCGCGUGCAGC- -5'
24676 5' -54.9 NC_005264.1 + 87126 0.68 0.8979
Target:  5'- ----gGCGCcCGCGggGCGCACcaGUCu -3'
miRNA:   3'- cuuagCGCGuGCGCaaCGCGUG--CAGc -5'
24676 5' -54.9 NC_005264.1 + 86503 0.66 0.95083
Target:  5'- cAGUCGC-CGCGCGgccaacuuuCGUGCGUCGa -3'
miRNA:   3'- cUUAGCGcGUGCGCaac------GCGUGCAGC- -5'
24676 5' -54.9 NC_005264.1 + 85052 0.66 0.942136
Target:  5'- -cGUCuGCGC-CGCGgUGCGUcucugcggccGCGUCGu -3'
miRNA:   3'- cuUAG-CGCGuGCGCaACGCG----------UGCAGC- -5'
24676 5' -54.9 NC_005264.1 + 82345 0.69 0.83912
Target:  5'- uGAGUaGaCGCACGUGUgccagGCagGCGCGUCGa -3'
miRNA:   3'- -CUUAgC-GCGUGCGCAa----CG--CGUGCAGC- -5'
24676 5' -54.9 NC_005264.1 + 81305 0.67 0.916266
Target:  5'- ---cCGCGCA-GCGUgcaUGUGUAUGUCa -3'
miRNA:   3'- cuuaGCGCGUgCGCA---ACGCGUGCAGc -5'
24676 5' -54.9 NC_005264.1 + 81111 0.69 0.822424
Target:  5'- aGAAUCG-GUACGCGUgGCGUGCGa-- -3'
miRNA:   3'- -CUUAGCgCGUGCGCAaCGCGUGCagc -5'
24676 5' -54.9 NC_005264.1 + 79717 0.67 0.904256
Target:  5'- ---aCGCGCcucCGCGgccuugGCGCcCGUCGg -3'
miRNA:   3'- cuuaGCGCGu--GCGCaa----CGCGuGCAGC- -5'
24676 5' -54.9 NC_005264.1 + 78414 0.66 0.956367
Target:  5'- --uUCGUGUACGUcccaaauggcauguuGUcugUGCGCACGUUa -3'
miRNA:   3'- cuuAGCGCGUGCG---------------CA---ACGCGUGCAGc -5'
24676 5' -54.9 NC_005264.1 + 75683 0.66 0.95483
Target:  5'- gGAGUCGCGCGCa----GCGC-CGUCu -3'
miRNA:   3'- -CUUAGCGCGUGcgcaaCGCGuGCAGc -5'
24676 5' -54.9 NC_005264.1 + 69662 0.68 0.877464
Target:  5'- aGGUCGgGCACGCG--GCGCugGg-- -3'
miRNA:   3'- cUUAGCgCGUGCGCaaCGCGugCagc -5'
24676 5' -54.9 NC_005264.1 + 68431 0.72 0.67998
Target:  5'- cGAUCGCGCAguccgcgcCGCGgucUGCGCGCGg-- -3'
miRNA:   3'- cUUAGCGCGU--------GCGCa--ACGCGUGCagc -5'
24676 5' -54.9 NC_005264.1 + 67737 0.67 0.910379
Target:  5'- -cGUgGCGCcuuCGCGUaucucgGCGCAgGUCGc -3'
miRNA:   3'- cuUAgCGCGu--GCGCAa-----CGCGUgCAGC- -5'
24676 5' -54.9 NC_005264.1 + 66608 0.69 0.830862
Target:  5'- ---cUGCGC-CGCGUUGCcgGCGcCGUCGc -3'
miRNA:   3'- cuuaGCGCGuGCGCAACG--CGU-GCAGC- -5'
24676 5' -54.9 NC_005264.1 + 66521 0.71 0.737779
Target:  5'- cGAG-CGUGCccugacgacgacCGCGUUGCGgGCGUCGg -3'
miRNA:   3'- -CUUaGCGCGu-----------GCGCAACGCgUGCAGC- -5'
24676 5' -54.9 NC_005264.1 + 66320 0.66 0.95483
Target:  5'- -uGUUGCGCG-GCGUcGUGCAUGUUu -3'
miRNA:   3'- cuUAGCGCGUgCGCAaCGCGUGCAGc -5'
24676 5' -54.9 NC_005264.1 + 62470 0.75 0.508606
Target:  5'- aGAAUCG-GUguuGCGCGUcgUGCGCGCGUCc -3'
miRNA:   3'- -CUUAGCgCG---UGCGCA--ACGCGUGCAGc -5'
24676 5' -54.9 NC_005264.1 + 61537 0.66 0.942136
Target:  5'- -uAUCGCGCugGgcauaGcUG-GCACGUCGg -3'
miRNA:   3'- cuUAGCGCGugCg----CaACgCGUGCAGC- -5'
24676 5' -54.9 NC_005264.1 + 60704 0.71 0.729949
Target:  5'- gGAAUCGCGCuuagaGCGUauuuccugGCGCAUGUgGa -3'
miRNA:   3'- -CUUAGCGCGug---CGCAa-------CGCGUGCAgC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.