Results 61 - 80 of 95 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24676 | 5' | -54.9 | NC_005264.1 | + | 59828 | 0.7 | 0.787027 |
Target: 5'- aGggUCGCGUACGCca-GCGCGCa--- -3' miRNA: 3'- -CuuAGCGCGUGCGcaaCGCGUGcagc -5' |
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24676 | 5' | -54.9 | NC_005264.1 | + | 59014 | 0.67 | 0.932502 |
Target: 5'- aGAAUCGCGgAgGCaGgcGCGuCAgGUCGg -3' miRNA: 3'- -CUUAGCGCgUgCG-CaaCGC-GUgCAGC- -5' |
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24676 | 5' | -54.9 | NC_005264.1 | + | 58769 | 0.67 | 0.932502 |
Target: 5'- ----gGCGCACGCGcgguggucgGCGCAgaggaUGUCGg -3' miRNA: 3'- cuuagCGCGUGCGCaa-------CGCGU-----GCAGC- -5' |
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24676 | 5' | -54.9 | NC_005264.1 | + | 56925 | 0.67 | 0.904256 |
Target: 5'- ----gGCGUACGUGcgugGCGCACGgggCGa -3' miRNA: 3'- cuuagCGCGUGCGCaa--CGCGUGCa--GC- -5' |
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24676 | 5' | -54.9 | NC_005264.1 | + | 54051 | 0.68 | 0.891313 |
Target: 5'- cGAcgUGCGCaACGCG-UGCGCGauUCGc -3' miRNA: 3'- -CUuaGCGCG-UGCGCaACGCGUgcAGC- -5' |
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24676 | 5' | -54.9 | NC_005264.1 | + | 51261 | 0.67 | 0.918555 |
Target: 5'- gGAAUCGCGgaacaucuguCGCGCGUUaccacgagcaggaagGCacccucguGCACGUCGg -3' miRNA: 3'- -CUUAGCGC----------GUGCGCAA---------------CG--------CGUGCAGC- -5' |
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24676 | 5' | -54.9 | NC_005264.1 | + | 50810 | 0.69 | 0.847191 |
Target: 5'- cGGAUCgGCGCGCGCGcagguUUGCGUguagACGUg- -3' miRNA: 3'- -CUUAG-CGCGUGCGC-----AACGCG----UGCAgc -5' |
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24676 | 5' | -54.9 | NC_005264.1 | + | 50565 | 0.74 | 0.598411 |
Target: 5'- ----gGCGCGCGCGUgcgggaaGCGCACG-CGg -3' miRNA: 3'- cuuagCGCGUGCGCAa------CGCGUGCaGC- -5' |
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24676 | 5' | -54.9 | NC_005264.1 | + | 48343 | 0.73 | 0.618807 |
Target: 5'- gGAGUUgGCGCACGCcauggcggccucGUUGCGCagugccGCGUCGa -3' miRNA: 3'- -CUUAG-CGCGUGCG------------CAACGCG------UGCAGC- -5' |
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24676 | 5' | -54.9 | NC_005264.1 | + | 47680 | 0.71 | 0.739727 |
Target: 5'- ---aCGCGUugGCGguuuccgcuuUUGCGC-CGUCGa -3' miRNA: 3'- cuuaGCGCGugCGC----------AACGCGuGCAGC- -5' |
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24676 | 5' | -54.9 | NC_005264.1 | + | 45559 | 0.7 | 0.787027 |
Target: 5'- -cAUCGCGCACGCGUacgauaggUG-GCACGa-- -3' miRNA: 3'- cuUAGCGCGUGCGCA--------ACgCGUGCagc -5' |
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24676 | 5' | -54.9 | NC_005264.1 | + | 44935 | 0.73 | 0.649455 |
Target: 5'- cGAAcCGCGgGCcCGUUGCGCGCGUg- -3' miRNA: 3'- -CUUaGCGCgUGcGCAACGCGUGCAgc -5' |
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24676 | 5' | -54.9 | NC_005264.1 | + | 43613 | 0.67 | 0.921916 |
Target: 5'- cGAUUGCGCGCcaaaccucGCGUgGuCGCGCGUUa -3' miRNA: 3'- cUUAGCGCGUG--------CGCAaC-GCGUGCAGc -5' |
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24676 | 5' | -54.9 | NC_005264.1 | + | 42056 | 0.68 | 0.891313 |
Target: 5'- cAAUCGCGUugccCGCGgcGCGUGgCGUCa -3' miRNA: 3'- cUUAGCGCGu---GCGCaaCGCGU-GCAGc -5' |
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24676 | 5' | -54.9 | NC_005264.1 | + | 39107 | 0.66 | 0.95483 |
Target: 5'- ---cCGUGCACGCcuacguGUUGCuGCGCuUCGg -3' miRNA: 3'- cuuaGCGCGUGCG------CAACG-CGUGcAGC- -5' |
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24676 | 5' | -54.9 | NC_005264.1 | + | 37658 | 0.75 | 0.508606 |
Target: 5'- -cAUCGUGCACGCGaUGCGCgACGggCGc -3' miRNA: 3'- cuUAGCGCGUGCGCaACGCG-UGCa-GC- -5' |
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24676 | 5' | -54.9 | NC_005264.1 | + | 33495 | 0.66 | 0.95083 |
Target: 5'- ---cCGCGCuuGCucaGUGCGCGUCGc -3' miRNA: 3'- cuuaGCGCGugCGcaaCGCGUGCAGC- -5' |
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24676 | 5' | -54.9 | NC_005264.1 | + | 32987 | 0.71 | 0.758992 |
Target: 5'- --cUCGCGCAuauCGCcaucggGCGCugGUCGg -3' miRNA: 3'- cuuAGCGCGU---GCGcaa---CGCGugCAGC- -5' |
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24676 | 5' | -54.9 | NC_005264.1 | + | 32917 | 0.72 | 0.669833 |
Target: 5'- cGAUCGCGCAgggguCGCGggGCGcCGCGUg- -3' miRNA: 3'- cUUAGCGCGU-----GCGCaaCGC-GUGCAgc -5' |
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24676 | 5' | -54.9 | NC_005264.1 | + | 31709 | 0.71 | 0.749411 |
Target: 5'- aGGUCGCGCGCgggGCGUacuUGUuCGCGUCGu -3' miRNA: 3'- cUUAGCGCGUG---CGCA---ACGcGUGCAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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