miRNA display CGI


Results 41 - 60 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24676 5' -54.9 NC_005264.1 + 51261 0.67 0.918555
Target:  5'- gGAAUCGCGgaacaucuguCGCGCGUUaccacgagcaggaagGCacccucguGCACGUCGg -3'
miRNA:   3'- -CUUAGCGC----------GUGCGCAA---------------CG--------CGUGCAGC- -5'
24676 5' -54.9 NC_005264.1 + 125184 0.71 0.749411
Target:  5'- -cGUCGCGCAuCGCGUgcacgaugugGgGCACGcCGg -3'
miRNA:   3'- cuUAGCGCGU-GCGCAa---------CgCGUGCaGC- -5'
24676 5' -54.9 NC_005264.1 + 39107 0.66 0.95483
Target:  5'- ---cCGUGCACGCcuacguGUUGCuGCGCuUCGg -3'
miRNA:   3'- cuuaGCGCGUGCG------CAACG-CGUGcAGC- -5'
24676 5' -54.9 NC_005264.1 + 150072 0.71 0.739727
Target:  5'- cGGUCGUGCGgcUGCGUUGCGgACGgcaggCGa -3'
miRNA:   3'- cUUAGCGCGU--GCGCAACGCgUGCa----GC- -5'
24676 5' -54.9 NC_005264.1 + 148503 0.69 0.862742
Target:  5'- uGGUCGCGUugGCGgcgaGCGC-CG-CGg -3'
miRNA:   3'- cUUAGCGCGugCGCaa--CGCGuGCaGC- -5'
24676 5' -54.9 NC_005264.1 + 81111 0.69 0.822424
Target:  5'- aGAAUCG-GUACGCGUgGCGUGCGa-- -3'
miRNA:   3'- -CUUAGCgCGUGCGCAaCGCGUGCagc -5'
24676 5' -54.9 NC_005264.1 + 85052 0.66 0.942136
Target:  5'- -cGUCuGCGC-CGCGgUGCGUcucugcggccGCGUCGu -3'
miRNA:   3'- cuUAG-CGCGuGCGCaACGCG----------UGCAGC- -5'
24676 5' -54.9 NC_005264.1 + 109169 0.79 0.350097
Target:  5'- aGAUCGCGCAUGCG--GCGUAUGUCa -3'
miRNA:   3'- cUUAGCGCGUGCGCaaCGCGUGCAGc -5'
24676 5' -54.9 NC_005264.1 + 37658 0.75 0.508606
Target:  5'- -cAUCGUGCACGCGaUGCGCgACGggCGc -3'
miRNA:   3'- cuUAGCGCGUGCGCaACGCG-UGCa-GC- -5'
24676 5' -54.9 NC_005264.1 + 89010 0.74 0.578114
Target:  5'- aGAUCGCGCA-GCuc-GCGCAUGUCGg -3'
miRNA:   3'- cUUAGCGCGUgCGcaaCGCGUGCAGC- -5'
24676 5' -54.9 NC_005264.1 + 82345 0.69 0.83912
Target:  5'- uGAGUaGaCGCACGUGUgccagGCagGCGCGUCGa -3'
miRNA:   3'- -CUUAgC-GCGUGCGCAa----CG--CGUGCAGC- -5'
24676 5' -54.9 NC_005264.1 + 145113 0.69 0.830862
Target:  5'- aGGUUGCGC-CGCGgcGCGCAgGUa- -3'
miRNA:   3'- cUUAGCGCGuGCGCaaCGCGUgCAgc -5'
24676 5' -54.9 NC_005264.1 + 147696 0.69 0.822424
Target:  5'- -cAUCGcCGCACGCGaUUGCcCGUGUCGg -3'
miRNA:   3'- cuUAGC-GCGUGCGC-AACGcGUGCAGC- -5'
24676 5' -54.9 NC_005264.1 + 69662 0.68 0.877464
Target:  5'- aGGUCGgGCACGCG--GCGCugGg-- -3'
miRNA:   3'- cUUAGCgCGUGCGCaaCGCGugCagc -5'
24676 5' -54.9 NC_005264.1 + 30630 0.68 0.891313
Target:  5'- cGGAUC-CGCGCGCagcGCGUAgGUCGu -3'
miRNA:   3'- -CUUAGcGCGUGCGcaaCGCGUgCAGC- -5'
24676 5' -54.9 NC_005264.1 + 54051 0.68 0.891313
Target:  5'- cGAcgUGCGCaACGCG-UGCGCGauUCGc -3'
miRNA:   3'- -CUuaGCGCG-UGCGCaACGCGUgcAGC- -5'
24676 5' -54.9 NC_005264.1 + 154917 0.67 0.929426
Target:  5'- cGAcgCGUggacGCGCGCGUUGCuagccagagcgugggGgACGUCGu -3'
miRNA:   3'- -CUuaGCG----CGUGCGCAACG---------------CgUGCAGC- -5'
24676 5' -54.9 NC_005264.1 + 59014 0.67 0.932502
Target:  5'- aGAAUCGCGgAgGCaGgcGCGuCAgGUCGg -3'
miRNA:   3'- -CUUAGCGCgUgCG-CaaCGC-GUgCAGC- -5'
24676 5' -54.9 NC_005264.1 + 122580 0.67 0.932502
Target:  5'- ---gCGcCGCAcCGCGUUGggguacCGCACGUCc -3'
miRNA:   3'- cuuaGC-GCGU-GCGCAAC------GCGUGCAGc -5'
24676 5' -54.9 NC_005264.1 + 29659 0.67 0.932502
Target:  5'- cGGUC-CGC-CGCGUUGCGUagcaucagggaGCGUCc -3'
miRNA:   3'- cUUAGcGCGuGCGCAACGCG-----------UGCAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.