miRNA display CGI


Results 61 - 80 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24676 5' -54.9 NC_005264.1 + 61537 0.66 0.942136
Target:  5'- -uAUCGCGCugGgcauaGcUG-GCACGUCGg -3'
miRNA:   3'- cuUAGCGCGugCg----CaACgCGUGCAGC- -5'
24676 5' -54.9 NC_005264.1 + 85052 0.66 0.942136
Target:  5'- -cGUCuGCGC-CGCGgUGCGUcucugcggccGCGUCGu -3'
miRNA:   3'- cuUAG-CGCGuGCGCaACGCG----------UGCAGC- -5'
24676 5' -54.9 NC_005264.1 + 157395 0.66 0.942136
Target:  5'- ---cUGCGCAUGCuGUacgGCGCgGCGUUGg -3'
miRNA:   3'- cuuaGCGCGUGCG-CAa--CGCG-UGCAGC- -5'
24676 5' -54.9 NC_005264.1 + 33495 0.66 0.95083
Target:  5'- ---cCGCGCuuGCucaGUGCGCGUCGc -3'
miRNA:   3'- cuuaGCGCGugCGcaaCGCGUGCAGC- -5'
24676 5' -54.9 NC_005264.1 + 30630 0.68 0.891313
Target:  5'- cGGAUC-CGCGCGCagcGCGUAgGUCGu -3'
miRNA:   3'- -CUUAGcGCGUGCGcaaCGCGUgCAGC- -5'
24676 5' -54.9 NC_005264.1 + 69662 0.68 0.877464
Target:  5'- aGGUCGgGCACGCG--GCGCugGg-- -3'
miRNA:   3'- cUUAGCgCGUGCGCaaCGCGugCagc -5'
24676 5' -54.9 NC_005264.1 + 29201 0.73 0.6086
Target:  5'- ---gCGUGCAaGUGUUGCGUGCGUCa -3'
miRNA:   3'- cuuaGCGCGUgCGCAACGCGUGCAGc -5'
24676 5' -54.9 NC_005264.1 + 44935 0.73 0.649455
Target:  5'- cGAAcCGCGgGCcCGUUGCGCGCGUg- -3'
miRNA:   3'- -CUUaGCGCgUGcGCAACGCGUGCAgc -5'
24676 5' -54.9 NC_005264.1 + 130550 0.72 0.669833
Target:  5'- -cGUCGCgGCGCGUGUgcuacGCGCAgGUCu -3'
miRNA:   3'- cuUAGCG-CGUGCGCAa----CGCGUgCAGc -5'
24676 5' -54.9 NC_005264.1 + 68431 0.72 0.67998
Target:  5'- cGAUCGCGCAguccgcgcCGCGgucUGCGCGCGg-- -3'
miRNA:   3'- cUUAGCGCGU--------GCGCa--ACGCGUGCagc -5'
24676 5' -54.9 NC_005264.1 + 90822 0.72 0.690088
Target:  5'- --cUCGCGUgugGCGgccGCGCACGUCGa -3'
miRNA:   3'- cuuAGCGCGug-CGCaa-CGCGUGCAGC- -5'
24676 5' -54.9 NC_005264.1 + 131601 0.72 0.700148
Target:  5'- gGAGggaGCgGCGCGCGUggGCGCGCG-CGg -3'
miRNA:   3'- -CUUag-CG-CGUGCGCAa-CGCGUGCaGC- -5'
24676 5' -54.9 NC_005264.1 + 60704 0.71 0.729949
Target:  5'- gGAAUCGCGCuuagaGCGUauuuccugGCGCAUGUgGa -3'
miRNA:   3'- -CUUAGCGCGug---CGCAa-------CGCGUGCAgC- -5'
24676 5' -54.9 NC_005264.1 + 31045 0.71 0.739727
Target:  5'- cGGUCGUGCGgcUGCGUUGCGgACGgcaggCGa -3'
miRNA:   3'- cUUAGCGCGU--GCGCAACGCgUGCa----GC- -5'
24676 5' -54.9 NC_005264.1 + 6157 0.71 0.749411
Target:  5'- -cGUCGCGCAuCGCGUgcacgaugugGgGCACGcCGg -3'
miRNA:   3'- cuUAGCGCGU-GCGCAa---------CgCGUGCaGC- -5'
24676 5' -54.9 NC_005264.1 + 31709 0.71 0.749411
Target:  5'- aGGUCGCGCGCgggGCGUacuUGUuCGCGUCGu -3'
miRNA:   3'- cUUAGCGCGUG---CGCA---ACGcGUGCAGC- -5'
24676 5' -54.9 NC_005264.1 + 147696 0.69 0.822424
Target:  5'- -cAUCGcCGCACGCGaUUGCcCGUGUCGg -3'
miRNA:   3'- cuUAGC-GCGUGCGC-AACGcGUGCAGC- -5'
24676 5' -54.9 NC_005264.1 + 145113 0.69 0.830862
Target:  5'- aGGUUGCGC-CGCGgcGCGCAgGUa- -3'
miRNA:   3'- cUUAGCGCGuGCGCaaCGCGUgCAgc -5'
24676 5' -54.9 NC_005264.1 + 82345 0.69 0.83912
Target:  5'- uGAGUaGaCGCACGUGUgccagGCagGCGCGUCGa -3'
miRNA:   3'- -CUUAgC-GCGUGCGCAa----CG--CGUGCAGC- -5'
24676 5' -54.9 NC_005264.1 + 50810 0.69 0.847191
Target:  5'- cGGAUCgGCGCGCGCGcagguUUGCGUguagACGUg- -3'
miRNA:   3'- -CUUAG-CGCGUGCGC-----AACGCG----UGCAgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.