Results 61 - 80 of 95 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24676 | 5' | -54.9 | NC_005264.1 | + | 109371 | 0.67 | 0.916266 |
Target: 5'- ---gCGaUGUGCGCGUUGCGCcuagucaagucgGCGUUGg -3' miRNA: 3'- cuuaGC-GCGUGCGCAACGCG------------UGCAGC- -5' |
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24676 | 5' | -54.9 | NC_005264.1 | + | 51261 | 0.67 | 0.918555 |
Target: 5'- gGAAUCGCGgaacaucuguCGCGCGUUaccacgagcaggaagGCacccucguGCACGUCGg -3' miRNA: 3'- -CUUAGCGC----------GUGCGCAA---------------CG--------CGUGCAGC- -5' |
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24676 | 5' | -54.9 | NC_005264.1 | + | 117165 | 0.67 | 0.921362 |
Target: 5'- gGGAUCGCGCcacgugcuucacuGCGCuugGCGCcuagccgccGCGUCGu -3' miRNA: 3'- -CUUAGCGCG-------------UGCGcaaCGCG---------UGCAGC- -5' |
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24676 | 5' | -54.9 | NC_005264.1 | + | 9469 | 0.67 | 0.921916 |
Target: 5'- --cUCGCGCaACGC-UU-CGCGCGUCu -3' miRNA: 3'- cuuAGCGCG-UGCGcAAcGCGUGCAGc -5' |
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24676 | 5' | -54.9 | NC_005264.1 | + | 59828 | 0.7 | 0.787027 |
Target: 5'- aGggUCGCGUACGCca-GCGCGCa--- -3' miRNA: 3'- -CuuAGCGCGUGCGcaaCGCGUGcagc -5' |
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24676 | 5' | -54.9 | NC_005264.1 | + | 152014 | 0.71 | 0.758992 |
Target: 5'- --cUCGCGCAuauCGCcaucggGCGCugGUCGg -3' miRNA: 3'- cuuAGCGCGU---GCGcaa---CGCGugCAGC- -5' |
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24676 | 5' | -54.9 | NC_005264.1 | + | 150735 | 0.71 | 0.749411 |
Target: 5'- aGGUCGCGCGCgggGCGUacuUGUuCGCGUCGu -3' miRNA: 3'- cUUAGCGCGUG---CGCA---ACGcGUGCAGC- -5' |
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24676 | 5' | -54.9 | NC_005264.1 | + | 109971 | 0.77 | 0.407516 |
Target: 5'- --cUCGCuCGCGCG-UGUGCACGUCGu -3' miRNA: 3'- cuuAGCGcGUGCGCaACGCGUGCAGC- -5' |
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24676 | 5' | -54.9 | NC_005264.1 | + | 62470 | 0.75 | 0.508606 |
Target: 5'- aGAAUCG-GUguuGCGCGUcgUGCGCGCGUCc -3' miRNA: 3'- -CUUAGCgCG---UGCGCA--ACGCGUGCAGc -5' |
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24676 | 5' | -54.9 | NC_005264.1 | + | 20528 | 0.75 | 0.528153 |
Target: 5'- ----gGgGCACGCGUUGCGCcCGUUGc -3' miRNA: 3'- cuuagCgCGUGCGCAACGCGuGCAGC- -5' |
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24676 | 5' | -54.9 | NC_005264.1 | + | 109264 | 0.75 | 0.528153 |
Target: 5'- --cUCGC-CACGCGUcGgGCGCGUCGu -3' miRNA: 3'- cuuAGCGcGUGCGCAaCgCGUGCAGC- -5' |
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24676 | 5' | -54.9 | NC_005264.1 | + | 50565 | 0.74 | 0.598411 |
Target: 5'- ----gGCGCGCGCGUgcgggaaGCGCACG-CGg -3' miRNA: 3'- cuuagCGCGUGCGCAa------CGCGUGCaGC- -5' |
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24676 | 5' | -54.9 | NC_005264.1 | + | 96658 | 0.73 | 0.6086 |
Target: 5'- -cGUCGCGCGCgGCGUUaGCGCACcccCGg -3' miRNA: 3'- cuUAGCGCGUG-CGCAA-CGCGUGca-GC- -5' |
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24676 | 5' | -54.9 | NC_005264.1 | + | 48343 | 0.73 | 0.618807 |
Target: 5'- gGAGUUgGCGCACGCcauggcggccucGUUGCGCagugccGCGUCGa -3' miRNA: 3'- -CUUAG-CGCGUGCG------------CAACGCG------UGCAGC- -5' |
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24676 | 5' | -54.9 | NC_005264.1 | + | 32917 | 0.72 | 0.669833 |
Target: 5'- cGAUCGCGCAgggguCGCGggGCGcCGCGUg- -3' miRNA: 3'- cUUAGCGCGU-----GCGCaaCGC-GUGCAgc -5' |
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24676 | 5' | -54.9 | NC_005264.1 | + | 66521 | 0.71 | 0.737779 |
Target: 5'- cGAG-CGUGCccugacgacgacCGCGUUGCGgGCGUCGg -3' miRNA: 3'- -CUUaGCGCGu-----------GCGCAACGCgUGCAGC- -5' |
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24676 | 5' | -54.9 | NC_005264.1 | + | 156686 | 0.71 | 0.739727 |
Target: 5'- ---aCGUGCACGCGaUGCGCgACGggCGc -3' miRNA: 3'- cuuaGCGCGUGCGCaACGCG-UGCa-GC- -5' |
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24676 | 5' | -54.9 | NC_005264.1 | + | 47680 | 0.71 | 0.739727 |
Target: 5'- ---aCGCGUugGCGguuuccgcuuUUGCGC-CGUCGa -3' miRNA: 3'- cuuaGCGCGugCGC----------AACGCGuGCAGC- -5' |
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24676 | 5' | -54.9 | NC_005264.1 | + | 150072 | 0.71 | 0.739727 |
Target: 5'- cGGUCGUGCGgcUGCGUUGCGgACGgcaggCGa -3' miRNA: 3'- cUUAGCGCGU--GCGCAACGCgUGCa----GC- -5' |
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24676 | 5' | -54.9 | NC_005264.1 | + | 125184 | 0.71 | 0.749411 |
Target: 5'- -cGUCGCGCAuCGCGUgcacgaugugGgGCACGcCGg -3' miRNA: 3'- cuUAGCGCGU-GCGCAa---------CgCGUGCaGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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