miRNA display CGI


Results 21 - 40 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24676 5' -54.9 NC_005264.1 + 95100 0.66 0.937438
Target:  5'- ---cUGCGCcgagauACGCGaagGCGCcACGUCGa -3'
miRNA:   3'- cuuaGCGCG------UGCGCaa-CGCG-UGCAGC- -5'
24676 5' -54.9 NC_005264.1 + 58769 0.67 0.932502
Target:  5'- ----gGCGCACGCGcgguggucgGCGCAgaggaUGUCGg -3'
miRNA:   3'- cuuagCGCGUGCGCaa-------CGCGU-----GCAGC- -5'
24676 5' -54.9 NC_005264.1 + 59014 0.67 0.932502
Target:  5'- aGAAUCGCGgAgGCaGgcGCGuCAgGUCGg -3'
miRNA:   3'- -CUUAGCGCgUgCG-CaaCGC-GUgCAGC- -5'
24676 5' -54.9 NC_005264.1 + 29659 0.67 0.932502
Target:  5'- cGGUC-CGC-CGCGUUGCGUagcaucagggaGCGUCc -3'
miRNA:   3'- cUUAGcGCGuGCGCAACGCG-----------UGCAGc -5'
24676 5' -54.9 NC_005264.1 + 122580 0.67 0.932502
Target:  5'- ---gCGcCGCAcCGCGUUGggguacCGCACGUCc -3'
miRNA:   3'- cuuaGC-GCGU-GCGCAAC------GCGUGCAGc -5'
24676 5' -54.9 NC_005264.1 + 154917 0.67 0.929426
Target:  5'- cGAcgCGUggacGCGCGCGUUGCuagccagagcgugggGgACGUCGu -3'
miRNA:   3'- -CUuaGCG----CGUGCGCAACG---------------CgUGCAGC- -5'
24676 5' -54.9 NC_005264.1 + 143882 0.67 0.927328
Target:  5'- aAGUCG-GCGCgGCGg-GCGCaACGUCGa -3'
miRNA:   3'- cUUAGCgCGUG-CGCaaCGCG-UGCAGC- -5'
24676 5' -54.9 NC_005264.1 + 91376 0.67 0.921916
Target:  5'- ---aCGCGCGagaG-GUUGUGCACGUUa -3'
miRNA:   3'- cuuaGCGCGUg--CgCAACGCGUGCAGc -5'
24676 5' -54.9 NC_005264.1 + 9469 0.67 0.921916
Target:  5'- --cUCGCGCaACGC-UU-CGCGCGUCu -3'
miRNA:   3'- cuuAGCGCG-UGCGcAAcGCGUGCAGc -5'
24676 5' -54.9 NC_005264.1 + 43613 0.67 0.921916
Target:  5'- cGAUUGCGCGCcaaaccucGCGUgGuCGCGCGUUa -3'
miRNA:   3'- cUUAGCGCGUG--------CGCAaC-GCGUGCAGc -5'
24676 5' -54.9 NC_005264.1 + 103015 0.67 0.921916
Target:  5'- ---gCGCGCugGCGUacGCGacccuCACGUCu -3'
miRNA:   3'- cuuaGCGCGugCGCAa-CGC-----GUGCAGc -5'
24676 5' -54.9 NC_005264.1 + 117165 0.67 0.921362
Target:  5'- gGGAUCGCGCcacgugcuucacuGCGCuugGCGCcuagccgccGCGUCGu -3'
miRNA:   3'- -CUUAGCGCG-------------UGCGcaaCGCG---------UGCAGC- -5'
24676 5' -54.9 NC_005264.1 + 51261 0.67 0.918555
Target:  5'- gGAAUCGCGgaacaucuguCGCGCGUUaccacgagcaggaagGCacccucguGCACGUCGg -3'
miRNA:   3'- -CUUAGCGC----------GUGCGCAA---------------CG--------CGUGCAGC- -5'
24676 5' -54.9 NC_005264.1 + 128574 0.67 0.916266
Target:  5'- cGGAgCGCaGCACGCGgauuaccgcGCGCACGaggCGg -3'
miRNA:   3'- -CUUaGCG-CGUGCGCaa-------CGCGUGCa--GC- -5'
24676 5' -54.9 NC_005264.1 + 81305 0.67 0.916266
Target:  5'- ---cCGCGCA-GCGUgcaUGUGUAUGUCa -3'
miRNA:   3'- cuuaGCGCGUgCGCA---ACGCGUGCAGc -5'
24676 5' -54.9 NC_005264.1 + 109371 0.67 0.916266
Target:  5'- ---gCGaUGUGCGCGUUGCGCcuagucaagucgGCGUUGg -3'
miRNA:   3'- cuuaGC-GCGUGCGCAACGCG------------UGCAGC- -5'
24676 5' -54.9 NC_005264.1 + 67737 0.67 0.910379
Target:  5'- -cGUgGCGCcuuCGCGUaucucgGCGCAgGUCGc -3'
miRNA:   3'- cuUAgCGCGu--GCGCAa-----CGCGUgCAGC- -5'
24676 5' -54.9 NC_005264.1 + 56925 0.67 0.904256
Target:  5'- ----gGCGUACGUGcgugGCGCACGgggCGa -3'
miRNA:   3'- cuuagCGCGUGCGCaa--CGCGUGCa--GC- -5'
24676 5' -54.9 NC_005264.1 + 79717 0.67 0.904256
Target:  5'- ---aCGCGCcucCGCGgccuugGCGCcCGUCGg -3'
miRNA:   3'- cuuaGCGCGu--GCGCaa----CGCGuGCAGC- -5'
24676 5' -54.9 NC_005264.1 + 8311 0.67 0.904256
Target:  5'- -cAUCGCcgGCACGCuuguUUGCGCGCGg-- -3'
miRNA:   3'- cuUAGCG--CGUGCGc---AACGCGUGCagc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.