miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24677 3' -53.1 NC_005264.1 + 139462 0.66 0.979783
Target:  5'- gGCGGCCAGGcguGUCUGGaucggaccauCGAGcACGc- -3'
miRNA:   3'- gCGCCGGUCC---UAGAUC----------GCUUuUGCag -5'
24677 3' -53.1 NC_005264.1 + 122007 0.66 0.979783
Target:  5'- gGCGGCCggccauagcGGGAUCUugagucucGGCGAccccgcggcAAGCGg- -3'
miRNA:   3'- gCGCCGG---------UCCUAGA--------UCGCU---------UUUGCag -5'
24677 3' -53.1 NC_005264.1 + 47016 0.66 0.979783
Target:  5'- gCGCGGUCAGuccuggGGCGAGcGACGUUg -3'
miRNA:   3'- -GCGCCGGUCcuaga-UCGCUU-UUGCAG- -5'
24677 3' -53.1 NC_005264.1 + 132870 0.66 0.978412
Target:  5'- aGCGGCCAGGGacgcggacauuggcaUgCUgugAGCGAAGGCu-- -3'
miRNA:   3'- gCGCCGGUCCU---------------A-GA---UCGCUUUUGcag -5'
24677 3' -53.1 NC_005264.1 + 2728 0.66 0.977461
Target:  5'- cCGCGGCCGGGcccgucuUCUAGguuuaaCGGc-GCGUCc -3'
miRNA:   3'- -GCGCCGGUCCu------AGAUC------GCUuuUGCAG- -5'
24677 3' -53.1 NC_005264.1 + 100723 0.66 0.977219
Target:  5'- aCGUGGCUcuggagaGGGcgCUGGuCGAgcucgccgAGGCGUCa -3'
miRNA:   3'- -GCGCCGG-------UCCuaGAUC-GCU--------UUUGCAG- -5'
24677 3' -53.1 NC_005264.1 + 76113 0.66 0.975977
Target:  5'- gCGCGGCaucagagGGGGUCUGcagaucuugcgcgacGCGGuacACGUCg -3'
miRNA:   3'- -GCGCCGg------UCCUAGAU---------------CGCUuu-UGCAG- -5'
24677 3' -53.1 NC_005264.1 + 158242 0.66 0.974949
Target:  5'- aCGCcGCCGcGGcgCUGGCGggGAgGg- -3'
miRNA:   3'- -GCGcCGGU-CCuaGAUCGCuuUUgCag -5'
24677 3' -53.1 NC_005264.1 + 132650 0.66 0.974949
Target:  5'- aCGCGGgCAGGggC-GGCGguAACGa- -3'
miRNA:   3'- -GCGCCgGUCCuaGaUCGCuuUUGCag -5'
24677 3' -53.1 NC_005264.1 + 39215 0.66 0.974949
Target:  5'- aCGCcGCCGcGGcgCUGGCGggGAgGg- -3'
miRNA:   3'- -GCGcCGGU-CCuaGAUCGCuuUUgCag -5'
24677 3' -53.1 NC_005264.1 + 53208 0.66 0.974949
Target:  5'- aCGUGGCCgAGGuaguggacgcguAUCUccGCGAAAGCGg- -3'
miRNA:   3'- -GCGCCGG-UCC------------UAGAu-CGCUUUUGCag -5'
24677 3' -53.1 NC_005264.1 + 135397 0.66 0.974949
Target:  5'- cCGCucGGCgCAGG-UCUGGCuGAAAGCcUCa -3'
miRNA:   3'- -GCG--CCG-GUCCuAGAUCG-CUUUUGcAG- -5'
24677 3' -53.1 NC_005264.1 + 13623 0.66 0.974949
Target:  5'- aCGCGGgCAGGggC-GGCGguAACGa- -3'
miRNA:   3'- -GCGCCgGUCCuaGaUCGCuuUUGCag -5'
24677 3' -53.1 NC_005264.1 + 110585 0.66 0.972238
Target:  5'- cCGUGGCCGGGugaguaGGCGggGGCc-- -3'
miRNA:   3'- -GCGCCGGUCCuaga--UCGCuuUUGcag -5'
24677 3' -53.1 NC_005264.1 + 55168 0.66 0.972238
Target:  5'- uGCGGCCucuGGGcgCggcugaaggcGGCGAccgcgAAACGUCg -3'
miRNA:   3'- gCGCCGG---UCCuaGa---------UCGCU-----UUUGCAG- -5'
24677 3' -53.1 NC_005264.1 + 74508 0.66 0.971672
Target:  5'- gGCGGCCAGGcugaucgacAUCgacGCGAuacaaagcuuCGUCa -3'
miRNA:   3'- gCGCCGGUCC---------UAGau-CGCUuuu-------GCAG- -5'
24677 3' -53.1 NC_005264.1 + 73063 0.66 0.969322
Target:  5'- uGCGGCCAGaGAcgUGGCGua---GUCg -3'
miRNA:   3'- gCGCCGGUC-CUagAUCGCuuuugCAG- -5'
24677 3' -53.1 NC_005264.1 + 4487 0.66 0.969322
Target:  5'- uCGC-GCgAGGGUCgcgAGCGGAGgggggacuggGCGUCc -3'
miRNA:   3'- -GCGcCGgUCCUAGa--UCGCUUU----------UGCAG- -5'
24677 3' -53.1 NC_005264.1 + 123514 0.66 0.969322
Target:  5'- uCGC-GCgAGGGUCgcgAGCGGAGgggggacuggGCGUCc -3'
miRNA:   3'- -GCGcCGgUCCUAGa--UCGCUUU----------UGCAG- -5'
24677 3' -53.1 NC_005264.1 + 16911 0.67 0.966194
Target:  5'- cCGuCGGCCGcGGAcgaUGGCGGcgGCGUUc -3'
miRNA:   3'- -GC-GCCGGU-CCUag-AUCGCUuuUGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.