Results 1 - 20 of 73 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
24677 | 3' | -53.1 | NC_005264.1 | + | 109572 | 1.1 | 0.005078 |
Target: 5'- gCGCGGCCAGGAUCUAGCGAAAACGUCu -3' miRNA: 3'- -GCGCCGGUCCUAGAUCGCUUUUGCAG- -5' |
|||||||
24677 | 3' | -53.1 | NC_005264.1 | + | 84968 | 0.79 | 0.425929 |
Target: 5'- uGCGGCCAGGcugCU-GCGuuAGCGUCg -3' miRNA: 3'- gCGCCGGUCCua-GAuCGCuuUUGCAG- -5' |
|||||||
24677 | 3' | -53.1 | NC_005264.1 | + | 32692 | 0.77 | 0.531103 |
Target: 5'- gGCGGCCAGGcuUUUAGCGggGGugaggUGUCa -3' miRNA: 3'- gCGCCGGUCCu-AGAUCGCuuUU-----GCAG- -5' |
|||||||
24677 | 3' | -53.1 | NC_005264.1 | + | 121921 | 0.76 | 0.571737 |
Target: 5'- gCGCGGCgGGGAgggCgacGGCGAGAGCGa- -3' miRNA: 3'- -GCGCCGgUCCUa--Ga--UCGCUUUUGCag -5' |
|||||||
24677 | 3' | -53.1 | NC_005264.1 | + | 2895 | 0.76 | 0.571737 |
Target: 5'- gCGCGGCgGGGAgggCgacGGCGAGAGCGa- -3' miRNA: 3'- -GCGCCGgUCCUa--Ga--UCGCUUUUGCag -5' |
|||||||
24677 | 3' | -53.1 | NC_005264.1 | + | 5009 | 0.75 | 0.61307 |
Target: 5'- cCGC-GCCGGGGUCgccGCGGAGuACGUCa -3' miRNA: 3'- -GCGcCGGUCCUAGau-CGCUUU-UGCAG- -5' |
|||||||
24677 | 3' | -53.1 | NC_005264.1 | + | 48406 | 0.75 | 0.592344 |
Target: 5'- gGCGGCCAGGAgcgGGUGggGGCa-- -3' miRNA: 3'- gCGCCGGUCCUagaUCGCuuUUGcag -5' |
|||||||
24677 | 3' | -53.1 | NC_005264.1 | + | 124036 | 0.75 | 0.61307 |
Target: 5'- cCGC-GCCGGGGUCgccGCGGAGuACGUCa -3' miRNA: 3'- -GCGcCGGUCCUAGau-CGCUUU-UGCAG- -5' |
|||||||
24677 | 3' | -53.1 | NC_005264.1 | + | 157392 | 0.74 | 0.685643 |
Target: 5'- gGCGGUUAGGAccuccUCcGGCGAGAGCGg- -3' miRNA: 3'- gCGCCGGUCCU-----AGaUCGCUUUUGCag -5' |
|||||||
24677 | 3' | -53.1 | NC_005264.1 | + | 38365 | 0.74 | 0.685643 |
Target: 5'- gGCGGUUAGGAccuccUCcGGCGAGAGCGg- -3' miRNA: 3'- gCGCCGGUCCU-----AGaUCGCUUUUGCag -5' |
|||||||
24677 | 3' | -53.1 | NC_005264.1 | + | 133954 | 0.74 | 0.6959 |
Target: 5'- aGCuuGGCCGGGGUCUucGCGguGGCGUUc -3' miRNA: 3'- gCG--CCGGUCCUAGAu-CGCuuUUGCAG- -5' |
|||||||
24677 | 3' | -53.1 | NC_005264.1 | + | 129499 | 0.74 | 0.665002 |
Target: 5'- gGCGGCgCAGGGUUUGGCGGcgccggAGGCGa- -3' miRNA: 3'- gCGCCG-GUCCUAGAUCGCU------UUUGCag -5' |
|||||||
24677 | 3' | -53.1 | NC_005264.1 | + | 155267 | 0.73 | 0.706102 |
Target: 5'- aGCGGCgCGGGGUaggcGGCGggGACGa- -3' miRNA: 3'- gCGCCG-GUCCUAga--UCGCuuUUGCag -5' |
|||||||
24677 | 3' | -53.1 | NC_005264.1 | + | 151054 | 0.71 | 0.80298 |
Target: 5'- uGCGGCgAGGcUCggccuaCGAGAGCGUCa -3' miRNA: 3'- gCGCCGgUCCuAGauc---GCUUUUGCAG- -5' |
|||||||
24677 | 3' | -53.1 | NC_005264.1 | + | 34530 | 0.71 | 0.837792 |
Target: 5'- uGCGGUUGGGcgUUGGCGggGuACGUg -3' miRNA: 3'- gCGCCGGUCCuaGAUCGCuuU-UGCAg -5' |
|||||||
24677 | 3' | -53.1 | NC_005264.1 | + | 135946 | 0.71 | 0.829358 |
Target: 5'- gGCGGCCGGGggCgAGCGAAuuAC-UCg -3' miRNA: 3'- gCGCCGGUCCuaGaUCGCUUu-UGcAG- -5' |
|||||||
24677 | 3' | -53.1 | NC_005264.1 | + | 153557 | 0.71 | 0.837792 |
Target: 5'- uGCGGUUGGGcgUUGGCGggGuACGUg -3' miRNA: 3'- gCGCCGGUCCuaGAUCGCuuU-UGCAg -5' |
|||||||
24677 | 3' | -53.1 | NC_005264.1 | + | 100484 | 0.7 | 0.854073 |
Target: 5'- gGCGGCCAGGGcccuggaggggUUgcgGGCGAAAGCc-- -3' miRNA: 3'- gCGCCGGUCCU-----------AGa--UCGCUUUUGcag -5' |
|||||||
24677 | 3' | -53.1 | NC_005264.1 | + | 100094 | 0.7 | 0.861905 |
Target: 5'- gGCGGCCGcGGggCUcAGCGAcGACG-Cg -3' miRNA: 3'- gCGCCGGU-CCuaGA-UCGCUuUUGCaG- -5' |
|||||||
24677 | 3' | -53.1 | NC_005264.1 | + | 159656 | 0.7 | 0.845217 |
Target: 5'- aCGCGGCCAGGuUCUuugacaaGGCaAGGACG-Cg -3' miRNA: 3'- -GCGCCGGUCCuAGA-------UCGcUUUUGCaG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home