miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24677 3' -53.1 NC_005264.1 + 109572 1.1 0.005078
Target:  5'- gCGCGGCCAGGAUCUAGCGAAAACGUCu -3'
miRNA:   3'- -GCGCCGGUCCUAGAUCGCUUUUGCAG- -5'
24677 3' -53.1 NC_005264.1 + 84968 0.79 0.425929
Target:  5'- uGCGGCCAGGcugCU-GCGuuAGCGUCg -3'
miRNA:   3'- gCGCCGGUCCua-GAuCGCuuUUGCAG- -5'
24677 3' -53.1 NC_005264.1 + 32692 0.77 0.531103
Target:  5'- gGCGGCCAGGcuUUUAGCGggGGugaggUGUCa -3'
miRNA:   3'- gCGCCGGUCCu-AGAUCGCuuUU-----GCAG- -5'
24677 3' -53.1 NC_005264.1 + 121921 0.76 0.571737
Target:  5'- gCGCGGCgGGGAgggCgacGGCGAGAGCGa- -3'
miRNA:   3'- -GCGCCGgUCCUa--Ga--UCGCUUUUGCag -5'
24677 3' -53.1 NC_005264.1 + 2895 0.76 0.571737
Target:  5'- gCGCGGCgGGGAgggCgacGGCGAGAGCGa- -3'
miRNA:   3'- -GCGCCGgUCCUa--Ga--UCGCUUUUGCag -5'
24677 3' -53.1 NC_005264.1 + 48406 0.75 0.592344
Target:  5'- gGCGGCCAGGAgcgGGUGggGGCa-- -3'
miRNA:   3'- gCGCCGGUCCUagaUCGCuuUUGcag -5'
24677 3' -53.1 NC_005264.1 + 124036 0.75 0.61307
Target:  5'- cCGC-GCCGGGGUCgccGCGGAGuACGUCa -3'
miRNA:   3'- -GCGcCGGUCCUAGau-CGCUUU-UGCAG- -5'
24677 3' -53.1 NC_005264.1 + 5009 0.75 0.61307
Target:  5'- cCGC-GCCGGGGUCgccGCGGAGuACGUCa -3'
miRNA:   3'- -GCGcCGGUCCUAGau-CGCUUU-UGCAG- -5'
24677 3' -53.1 NC_005264.1 + 129499 0.74 0.665002
Target:  5'- gGCGGCgCAGGGUUUGGCGGcgccggAGGCGa- -3'
miRNA:   3'- gCGCCG-GUCCUAGAUCGCU------UUUGCag -5'
24677 3' -53.1 NC_005264.1 + 38365 0.74 0.685643
Target:  5'- gGCGGUUAGGAccuccUCcGGCGAGAGCGg- -3'
miRNA:   3'- gCGCCGGUCCU-----AGaUCGCUUUUGCag -5'
24677 3' -53.1 NC_005264.1 + 157392 0.74 0.685643
Target:  5'- gGCGGUUAGGAccuccUCcGGCGAGAGCGg- -3'
miRNA:   3'- gCGCCGGUCCU-----AGaUCGCUUUUGCag -5'
24677 3' -53.1 NC_005264.1 + 133954 0.74 0.6959
Target:  5'- aGCuuGGCCGGGGUCUucGCGguGGCGUUc -3'
miRNA:   3'- gCG--CCGGUCCUAGAu-CGCuuUUGCAG- -5'
24677 3' -53.1 NC_005264.1 + 155267 0.73 0.706102
Target:  5'- aGCGGCgCGGGGUaggcGGCGggGACGa- -3'
miRNA:   3'- gCGCCG-GUCCUAga--UCGCuuUUGCag -5'
24677 3' -53.1 NC_005264.1 + 151054 0.71 0.80298
Target:  5'- uGCGGCgAGGcUCggccuaCGAGAGCGUCa -3'
miRNA:   3'- gCGCCGgUCCuAGauc---GCUUUUGCAG- -5'
24677 3' -53.1 NC_005264.1 + 135946 0.71 0.829358
Target:  5'- gGCGGCCGGGggCgAGCGAAuuAC-UCg -3'
miRNA:   3'- gCGCCGGUCCuaGaUCGCUUu-UGcAG- -5'
24677 3' -53.1 NC_005264.1 + 153557 0.71 0.837792
Target:  5'- uGCGGUUGGGcgUUGGCGggGuACGUg -3'
miRNA:   3'- gCGCCGGUCCuaGAUCGCuuU-UGCAg -5'
24677 3' -53.1 NC_005264.1 + 34530 0.71 0.837792
Target:  5'- uGCGGUUGGGcgUUGGCGggGuACGUg -3'
miRNA:   3'- gCGCCGGUCCuaGAUCGCuuU-UGCAg -5'
24677 3' -53.1 NC_005264.1 + 159656 0.7 0.845217
Target:  5'- aCGCGGCCAGGuUCUuugacaaGGCaAGGACG-Cg -3'
miRNA:   3'- -GCGCCGGUCCuAGA-------UCGcUUUUGCaG- -5'
24677 3' -53.1 NC_005264.1 + 100484 0.7 0.854073
Target:  5'- gGCGGCCAGGGcccuggaggggUUgcgGGCGAAAGCc-- -3'
miRNA:   3'- gCGCCGGUCCU-----------AGa--UCGCUUUUGcag -5'
24677 3' -53.1 NC_005264.1 + 100094 0.7 0.861905
Target:  5'- gGCGGCCGcGGggCUcAGCGAcGACG-Cg -3'
miRNA:   3'- gCGCCGGU-CCuaGA-UCGCUuUUGCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.