miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24677 3' -53.1 NC_005264.1 + 127846 0.7 0.869524
Target:  5'- gGCGGCCGGcGGUCUAgaacccggcgcGCGAAuGGgGUCu -3'
miRNA:   3'- gCGCCGGUC-CUAGAU-----------CGCUU-UUgCAG- -5'
24677 3' -53.1 NC_005264.1 + 117182 0.7 0.876923
Target:  5'- aGCGGgCCGGGGaa-GGCGAcucugccagGAACGUCa -3'
miRNA:   3'- gCGCC-GGUCCUagaUCGCU---------UUUGCAG- -5'
24677 3' -53.1 NC_005264.1 + 153509 0.7 0.876923
Target:  5'- gGCGGCCGccc-CUGGCGggGACGa- -3'
miRNA:   3'- gCGCCGGUccuaGAUCGCuuUUGCag -5'
24677 3' -53.1 NC_005264.1 + 63639 0.7 0.876923
Target:  5'- aGCGGCCGcGGAggcCU-GCGAGGaccccACGUCu -3'
miRNA:   3'- gCGCCGGU-CCUa--GAuCGCUUU-----UGCAG- -5'
24677 3' -53.1 NC_005264.1 + 127699 0.7 0.884096
Target:  5'- cCGCGGCCAGGcc--GGgGAAGAauccCGUCa -3'
miRNA:   3'- -GCGCCGGUCCuagaUCgCUUUU----GCAG- -5'
24677 3' -53.1 NC_005264.1 + 65248 0.7 0.884096
Target:  5'- cCGCGGCCgAGGAagcgguacgguUCUAGCucu-ACGUUa -3'
miRNA:   3'- -GCGCCGG-UCCU-----------AGAUCGcuuuUGCAG- -5'
24677 3' -53.1 NC_005264.1 + 67730 0.69 0.890356
Target:  5'- gGCGGCUucGGGGcaaaggcUCUcAGCGAAAucaggGCGUCg -3'
miRNA:   3'- gCGCCGG--UCCU-------AGA-UCGCUUU-----UGCAG- -5'
24677 3' -53.1 NC_005264.1 + 119190 0.69 0.89104
Target:  5'- aGCGGCCAacgcCUGGCGAagcGAGCGUa -3'
miRNA:   3'- gCGCCGGUccuaGAUCGCU---UUUGCAg -5'
24677 3' -53.1 NC_005264.1 + 77999 0.69 0.89104
Target:  5'- --aGGCCGcGAUCgcgGGCGAucACGUCg -3'
miRNA:   3'- gcgCCGGUcCUAGa--UCGCUuuUGCAG- -5'
24677 3' -53.1 NC_005264.1 + 1386 0.69 0.904218
Target:  5'- uCGCGGauCCGGGAg-UGGCGAGGACa-- -3'
miRNA:   3'- -GCGCC--GGUCCUagAUCGCUUUUGcag -5'
24677 3' -53.1 NC_005264.1 + 120413 0.69 0.904218
Target:  5'- uCGCGGauCCGGGAg-UGGCGAGGACa-- -3'
miRNA:   3'- -GCGCC--GGUCCUagAUCGCUUUUGcag -5'
24677 3' -53.1 NC_005264.1 + 149814 0.69 0.904218
Target:  5'- aGCGGCCguAGGGUCccGCGAc-ACGUa -3'
miRNA:   3'- gCGCCGG--UCCUAGauCGCUuuUGCAg -5'
24677 3' -53.1 NC_005264.1 + 82063 0.69 0.910446
Target:  5'- -aCGGCCAGGccagaucUCUGcGCGGAGGgGUCg -3'
miRNA:   3'- gcGCCGGUCCu------AGAU-CGCUUUUgCAG- -5'
24677 3' -53.1 NC_005264.1 + 10858 0.69 0.910446
Target:  5'- -uCGaGCCAaGAUCUGGCGAAGAUGg- -3'
miRNA:   3'- gcGC-CGGUcCUAGAUCGCUUUUGCag -5'
24677 3' -53.1 NC_005264.1 + 23336 0.69 0.914662
Target:  5'- uCGCGGCCagcGGGGUCUgccccgaGGCGAuucucuccaGUCg -3'
miRNA:   3'- -GCGCCGG---UCCUAGA-------UCGCUuuug-----CAG- -5'
24677 3' -53.1 NC_005264.1 + 56605 0.68 0.92217
Target:  5'- gCGCGGCCcaucuGGGAUCUuGCaau--CGUCg -3'
miRNA:   3'- -GCGCCGG-----UCCUAGAuCGcuuuuGCAG- -5'
24677 3' -53.1 NC_005264.1 + 66217 0.68 0.92217
Target:  5'- cCGCGGCCagcgaAGGAcUUGGCGAGcuGCGg- -3'
miRNA:   3'- -GCGCCGG-----UCCUaGAUCGCUUu-UGCag -5'
24677 3' -53.1 NC_005264.1 + 41653 0.68 0.927663
Target:  5'- gCGCGGCCGGG-UCUA---AGGACGUg -3'
miRNA:   3'- -GCGCCGGUCCuAGAUcgcUUUUGCAg -5'
24677 3' -53.1 NC_005264.1 + 136797 0.68 0.927663
Target:  5'- gCGUGGCCGGGcggacaaagCUGGCGGAcgcuuGGCGa- -3'
miRNA:   3'- -GCGCCGGUCCua-------GAUCGCUU-----UUGCag -5'
24677 3' -53.1 NC_005264.1 + 53071 0.68 0.927663
Target:  5'- gGUGGCCGcGGAcCcAGCGGGAGUGUCu -3'
miRNA:   3'- gCGCCGGU-CCUaGaUCGCUUUUGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.