Results 41 - 60 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24677 | 3' | -53.1 | NC_005264.1 | + | 118162 | 0.68 | 0.932909 |
Target: 5'- cCGUGGCCGcccauGUCUGGCGGcu-CGUCg -3' miRNA: 3'- -GCGCCGGUcc---UAGAUCGCUuuuGCAG- -5' |
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24677 | 3' | -53.1 | NC_005264.1 | + | 95304 | 0.68 | 0.937909 |
Target: 5'- uGCGaGCCAGGAUacaucccCGggGACGUg -3' miRNA: 3'- gCGC-CGGUCCUAgauc---GCuuUUGCAg -5' |
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24677 | 3' | -53.1 | NC_005264.1 | + | 93001 | 0.68 | 0.937909 |
Target: 5'- aCGCGGCCG-----UAGCGggGGCaGUCa -3' miRNA: 3'- -GCGCCGGUccuagAUCGCuuUUG-CAG- -5' |
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24677 | 3' | -53.1 | NC_005264.1 | + | 87651 | 0.68 | 0.937909 |
Target: 5'- uGgGGCgCGGGAcCUGGCGgcAACGg- -3' miRNA: 3'- gCgCCG-GUCCUaGAUCGCuuUUGCag -5' |
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24677 | 3' | -53.1 | NC_005264.1 | + | 76928 | 0.68 | 0.942664 |
Target: 5'- aCGCGGUCAGaGUC-AGCGccuGCGUUa -3' miRNA: 3'- -GCGCCGGUCcUAGaUCGCuuuUGCAG- -5' |
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24677 | 3' | -53.1 | NC_005264.1 | + | 75235 | 0.68 | 0.942664 |
Target: 5'- gCGCGGCCAGG-UCguccGCGuuugccggcaAGcGCGUCg -3' miRNA: 3'- -GCGCCGGUCCuAGau--CGC----------UUuUGCAG- -5' |
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24677 | 3' | -53.1 | NC_005264.1 | + | 39864 | 0.67 | 0.950189 |
Target: 5'- gCGCGGCCAGGAcguuccucuacccuUCUugacGGCGGccacccugAGAaaaGUCg -3' miRNA: 3'- -GCGCCGGUCCU--------------AGA----UCGCU--------UUUg--CAG- -5' |
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24677 | 3' | -53.1 | NC_005264.1 | + | 158890 | 0.67 | 0.950189 |
Target: 5'- gCGCGGCCAGGAcguuccucuacccuUCUugacGGCGGccacccugAGAaaaGUCg -3' miRNA: 3'- -GCGCCGGUCCU--------------AGA----UCGCU--------UUUg--CAG- -5' |
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24677 | 3' | -53.1 | NC_005264.1 | + | 71816 | 0.67 | 0.951445 |
Target: 5'- aGCGGCCgaagccgcccgcGGGGUC--GCGAAuaacgacGCGUCg -3' miRNA: 3'- gCGCCGG------------UCCUAGauCGCUUu------UGCAG- -5' |
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24677 | 3' | -53.1 | NC_005264.1 | + | 14048 | 0.67 | 0.955478 |
Target: 5'- aCGUGGCgGGGccg-GGUGGGAACGUg -3' miRNA: 3'- -GCGCCGgUCCuagaUCGCUUUUGCAg -5' |
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24677 | 3' | -53.1 | NC_005264.1 | + | 26159 | 0.67 | 0.961801 |
Target: 5'- cCGCGGCgAGGA-CUuucgcggcacugucGGCGggGcCGUUg -3' miRNA: 3'- -GCGCCGgUCCUaGA--------------UCGCuuUuGCAG- -5' |
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24677 | 3' | -53.1 | NC_005264.1 | + | 136700 | 0.67 | 0.962848 |
Target: 5'- cCGCGGCCuGGGAcaUCaUGGCccuggagacgcgGAAGAgGUCg -3' miRNA: 3'- -GCGCCGG-UCCU--AG-AUCG------------CUUUUgCAG- -5' |
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24677 | 3' | -53.1 | NC_005264.1 | + | 62229 | 0.67 | 0.962848 |
Target: 5'- cCGCGGCCgcuucGGGGUCgucgguauccuUGGCGAcgguuuccgAGACGaUCg -3' miRNA: 3'- -GCGCCGG-----UCCUAG-----------AUCGCU---------UUUGC-AG- -5' |
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24677 | 3' | -53.1 | NC_005264.1 | + | 16911 | 0.67 | 0.966194 |
Target: 5'- cCGuCGGCCGcGGAcgaUGGCGGcgGCGUUc -3' miRNA: 3'- -GC-GCCGGU-CCUag-AUCGCUuuUGCAG- -5' |
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24677 | 3' | -53.1 | NC_005264.1 | + | 4487 | 0.66 | 0.969322 |
Target: 5'- uCGC-GCgAGGGUCgcgAGCGGAGgggggacuggGCGUCc -3' miRNA: 3'- -GCGcCGgUCCUAGa--UCGCUUU----------UGCAG- -5' |
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24677 | 3' | -53.1 | NC_005264.1 | + | 73063 | 0.66 | 0.969322 |
Target: 5'- uGCGGCCAGaGAcgUGGCGua---GUCg -3' miRNA: 3'- gCGCCGGUC-CUagAUCGCuuuugCAG- -5' |
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24677 | 3' | -53.1 | NC_005264.1 | + | 123514 | 0.66 | 0.969322 |
Target: 5'- uCGC-GCgAGGGUCgcgAGCGGAGgggggacuggGCGUCc -3' miRNA: 3'- -GCGcCGgUCCUAGa--UCGCUUU----------UGCAG- -5' |
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24677 | 3' | -53.1 | NC_005264.1 | + | 74508 | 0.66 | 0.971672 |
Target: 5'- gGCGGCCAGGcugaucgacAUCgacGCGAuacaaagcuuCGUCa -3' miRNA: 3'- gCGCCGGUCC---------UAGau-CGCUuuu-------GCAG- -5' |
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24677 | 3' | -53.1 | NC_005264.1 | + | 110585 | 0.66 | 0.972238 |
Target: 5'- cCGUGGCCGGGugaguaGGCGggGGCc-- -3' miRNA: 3'- -GCGCCGGUCCuaga--UCGCuuUUGcag -5' |
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24677 | 3' | -53.1 | NC_005264.1 | + | 55168 | 0.66 | 0.972238 |
Target: 5'- uGCGGCCucuGGGcgCggcugaaggcGGCGAccgcgAAACGUCg -3' miRNA: 3'- gCGCCGG---UCCuaGa---------UCGCU-----UUUGCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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