miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24677 3' -53.1 NC_005264.1 + 62229 0.67 0.962848
Target:  5'- cCGCGGCCgcuucGGGGUCgucgguauccuUGGCGAcgguuuccgAGACGaUCg -3'
miRNA:   3'- -GCGCCGG-----UCCUAG-----------AUCGCU---------UUUGC-AG- -5'
24677 3' -53.1 NC_005264.1 + 136700 0.67 0.962848
Target:  5'- cCGCGGCCuGGGAcaUCaUGGCccuggagacgcgGAAGAgGUCg -3'
miRNA:   3'- -GCGCCGG-UCCU--AG-AUCG------------CUUUUgCAG- -5'
24677 3' -53.1 NC_005264.1 + 26159 0.67 0.961801
Target:  5'- cCGCGGCgAGGA-CUuucgcggcacugucGGCGggGcCGUUg -3'
miRNA:   3'- -GCGCCGgUCCUaGA--------------UCGCuuUuGCAG- -5'
24677 3' -53.1 NC_005264.1 + 14048 0.67 0.955478
Target:  5'- aCGUGGCgGGGccg-GGUGGGAACGUg -3'
miRNA:   3'- -GCGCCGgUCCuagaUCGCUUUUGCAg -5'
24677 3' -53.1 NC_005264.1 + 71816 0.67 0.951445
Target:  5'- aGCGGCCgaagccgcccgcGGGGUC--GCGAAuaacgacGCGUCg -3'
miRNA:   3'- gCGCCGG------------UCCUAGauCGCUUu------UGCAG- -5'
24677 3' -53.1 NC_005264.1 + 39864 0.67 0.950189
Target:  5'- gCGCGGCCAGGAcguuccucuacccuUCUugacGGCGGccacccugAGAaaaGUCg -3'
miRNA:   3'- -GCGCCGGUCCU--------------AGA----UCGCU--------UUUg--CAG- -5'
24677 3' -53.1 NC_005264.1 + 158890 0.67 0.950189
Target:  5'- gCGCGGCCAGGAcguuccucuacccuUCUugacGGCGGccacccugAGAaaaGUCg -3'
miRNA:   3'- -GCGCCGGUCCU--------------AGA----UCGCU--------UUUg--CAG- -5'
24677 3' -53.1 NC_005264.1 + 76928 0.68 0.942664
Target:  5'- aCGCGGUCAGaGUC-AGCGccuGCGUUa -3'
miRNA:   3'- -GCGCCGGUCcUAGaUCGCuuuUGCAG- -5'
24677 3' -53.1 NC_005264.1 + 75235 0.68 0.942664
Target:  5'- gCGCGGCCAGG-UCguccGCGuuugccggcaAGcGCGUCg -3'
miRNA:   3'- -GCGCCGGUCCuAGau--CGC----------UUuUGCAG- -5'
24677 3' -53.1 NC_005264.1 + 95304 0.68 0.937909
Target:  5'- uGCGaGCCAGGAUacaucccCGggGACGUg -3'
miRNA:   3'- gCGC-CGGUCCUAgauc---GCuuUUGCAg -5'
24677 3' -53.1 NC_005264.1 + 93001 0.68 0.937909
Target:  5'- aCGCGGCCG-----UAGCGggGGCaGUCa -3'
miRNA:   3'- -GCGCCGGUccuagAUCGCuuUUG-CAG- -5'
24677 3' -53.1 NC_005264.1 + 87651 0.68 0.937909
Target:  5'- uGgGGCgCGGGAcCUGGCGgcAACGg- -3'
miRNA:   3'- gCgCCG-GUCCUaGAUCGCuuUUGCag -5'
24677 3' -53.1 NC_005264.1 + 118162 0.68 0.932909
Target:  5'- cCGUGGCCGcccauGUCUGGCGGcu-CGUCg -3'
miRNA:   3'- -GCGCCGGUcc---UAGAUCGCUuuuGCAG- -5'
24677 3' -53.1 NC_005264.1 + 136797 0.68 0.927663
Target:  5'- gCGUGGCCGGGcggacaaagCUGGCGGAcgcuuGGCGa- -3'
miRNA:   3'- -GCGCCGGUCCua-------GAUCGCUU-----UUGCag -5'
24677 3' -53.1 NC_005264.1 + 53071 0.68 0.927663
Target:  5'- gGUGGCCGcGGAcCcAGCGGGAGUGUCu -3'
miRNA:   3'- gCGCCGGU-CCUaGaUCGCUUUUGCAG- -5'
24677 3' -53.1 NC_005264.1 + 41653 0.68 0.927663
Target:  5'- gCGCGGCCGGG-UCUA---AGGACGUg -3'
miRNA:   3'- -GCGCCGGUCCuAGAUcgcUUUUGCAg -5'
24677 3' -53.1 NC_005264.1 + 56605 0.68 0.92217
Target:  5'- gCGCGGCCcaucuGGGAUCUuGCaau--CGUCg -3'
miRNA:   3'- -GCGCCGG-----UCCUAGAuCGcuuuuGCAG- -5'
24677 3' -53.1 NC_005264.1 + 66217 0.68 0.92217
Target:  5'- cCGCGGCCagcgaAGGAcUUGGCGAGcuGCGg- -3'
miRNA:   3'- -GCGCCGG-----UCCUaGAUCGCUUu-UGCag -5'
24677 3' -53.1 NC_005264.1 + 23336 0.69 0.914662
Target:  5'- uCGCGGCCagcGGGGUCUgccccgaGGCGAuucucuccaGUCg -3'
miRNA:   3'- -GCGCCGG---UCCUAGA-------UCGCUuuug-----CAG- -5'
24677 3' -53.1 NC_005264.1 + 10858 0.69 0.910446
Target:  5'- -uCGaGCCAaGAUCUGGCGAAGAUGg- -3'
miRNA:   3'- gcGC-CGGUcCUAGAUCGCUUUUGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.