miRNA display CGI


Results 41 - 60 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24677 3' -53.1 NC_005264.1 + 10858 0.69 0.910446
Target:  5'- -uCGaGCCAaGAUCUGGCGAAGAUGg- -3'
miRNA:   3'- gcGC-CGGUcCUAGAUCGCUUUUGCag -5'
24677 3' -53.1 NC_005264.1 + 1386 0.69 0.904218
Target:  5'- uCGCGGauCCGGGAg-UGGCGAGGACa-- -3'
miRNA:   3'- -GCGCC--GGUCCUagAUCGCUUUUGcag -5'
24677 3' -53.1 NC_005264.1 + 120413 0.69 0.904218
Target:  5'- uCGCGGauCCGGGAg-UGGCGAGGACa-- -3'
miRNA:   3'- -GCGCC--GGUCCUagAUCGCUUUUGcag -5'
24677 3' -53.1 NC_005264.1 + 149814 0.69 0.904218
Target:  5'- aGCGGCCguAGGGUCccGCGAc-ACGUa -3'
miRNA:   3'- gCGCCGG--UCCUAGauCGCUuuUGCAg -5'
24677 3' -53.1 NC_005264.1 + 119190 0.69 0.89104
Target:  5'- aGCGGCCAacgcCUGGCGAagcGAGCGUa -3'
miRNA:   3'- gCGCCGGUccuaGAUCGCU---UUUGCAg -5'
24677 3' -53.1 NC_005264.1 + 77999 0.69 0.89104
Target:  5'- --aGGCCGcGAUCgcgGGCGAucACGUCg -3'
miRNA:   3'- gcgCCGGUcCUAGa--UCGCUuuUGCAG- -5'
24677 3' -53.1 NC_005264.1 + 67730 0.69 0.890356
Target:  5'- gGCGGCUucGGGGcaaaggcUCUcAGCGAAAucaggGCGUCg -3'
miRNA:   3'- gCGCCGG--UCCU-------AGA-UCGCUUU-----UGCAG- -5'
24677 3' -53.1 NC_005264.1 + 65248 0.7 0.884096
Target:  5'- cCGCGGCCgAGGAagcgguacgguUCUAGCucu-ACGUUa -3'
miRNA:   3'- -GCGCCGG-UCCU-----------AGAUCGcuuuUGCAG- -5'
24677 3' -53.1 NC_005264.1 + 127699 0.7 0.884096
Target:  5'- cCGCGGCCAGGcc--GGgGAAGAauccCGUCa -3'
miRNA:   3'- -GCGCCGGUCCuagaUCgCUUUU----GCAG- -5'
24677 3' -53.1 NC_005264.1 + 117182 0.7 0.876923
Target:  5'- aGCGGgCCGGGGaa-GGCGAcucugccagGAACGUCa -3'
miRNA:   3'- gCGCC-GGUCCUagaUCGCU---------UUUGCAG- -5'
24677 3' -53.1 NC_005264.1 + 63639 0.7 0.876923
Target:  5'- aGCGGCCGcGGAggcCU-GCGAGGaccccACGUCu -3'
miRNA:   3'- gCGCCGGU-CCUa--GAuCGCUUU-----UGCAG- -5'
24677 3' -53.1 NC_005264.1 + 153509 0.7 0.876923
Target:  5'- gGCGGCCGccc-CUGGCGggGACGa- -3'
miRNA:   3'- gCGCCGGUccuaGAUCGCuuUUGCag -5'
24677 3' -53.1 NC_005264.1 + 127846 0.7 0.869524
Target:  5'- gGCGGCCGGcGGUCUAgaacccggcgcGCGAAuGGgGUCu -3'
miRNA:   3'- gCGCCGGUC-CUAGAU-----------CGCUU-UUgCAG- -5'
24677 3' -53.1 NC_005264.1 + 100094 0.7 0.861905
Target:  5'- gGCGGCCGcGGggCUcAGCGAcGACG-Cg -3'
miRNA:   3'- gCGCCGGU-CCuaGA-UCGCUuUUGCaG- -5'
24677 3' -53.1 NC_005264.1 + 100484 0.7 0.854073
Target:  5'- gGCGGCCAGGGcccuggaggggUUgcgGGCGAAAGCc-- -3'
miRNA:   3'- gCGCCGGUCCU-----------AGa--UCGCUUUUGcag -5'
24677 3' -53.1 NC_005264.1 + 159656 0.7 0.845217
Target:  5'- aCGCGGCCAGGuUCUuugacaaGGCaAGGACG-Cg -3'
miRNA:   3'- -GCGCCGGUCCuAGA-------UCGcUUUUGCaG- -5'
24677 3' -53.1 NC_005264.1 + 153557 0.71 0.837792
Target:  5'- uGCGGUUGGGcgUUGGCGggGuACGUg -3'
miRNA:   3'- gCGCCGGUCCuaGAUCGCuuU-UGCAg -5'
24677 3' -53.1 NC_005264.1 + 34530 0.71 0.837792
Target:  5'- uGCGGUUGGGcgUUGGCGggGuACGUg -3'
miRNA:   3'- gCGCCGGUCCuaGAUCGCuuU-UGCAg -5'
24677 3' -53.1 NC_005264.1 + 135946 0.71 0.829358
Target:  5'- gGCGGCCGGGggCgAGCGAAuuAC-UCg -3'
miRNA:   3'- gCGCCGGUCCuaGaUCGCUUu-UGcAG- -5'
24677 3' -53.1 NC_005264.1 + 151054 0.71 0.80298
Target:  5'- uGCGGCgAGGcUCggccuaCGAGAGCGUCa -3'
miRNA:   3'- gCGCCGgUCCuAGauc---GCUUUUGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.