miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24677 3' -53.1 NC_005264.1 + 1386 0.69 0.904218
Target:  5'- uCGCGGauCCGGGAg-UGGCGAGGACa-- -3'
miRNA:   3'- -GCGCC--GGUCCUagAUCGCUUUUGcag -5'
24677 3' -53.1 NC_005264.1 + 2728 0.66 0.977461
Target:  5'- cCGCGGCCGGGcccgucuUCUAGguuuaaCGGc-GCGUCc -3'
miRNA:   3'- -GCGCCGGUCCu------AGAUC------GCUuuUGCAG- -5'
24677 3' -53.1 NC_005264.1 + 2895 0.76 0.571737
Target:  5'- gCGCGGCgGGGAgggCgacGGCGAGAGCGa- -3'
miRNA:   3'- -GCGCCGgUCCUa--Ga--UCGCUUUUGCag -5'
24677 3' -53.1 NC_005264.1 + 4487 0.66 0.969322
Target:  5'- uCGC-GCgAGGGUCgcgAGCGGAGgggggacuggGCGUCc -3'
miRNA:   3'- -GCGcCGgUCCUAGa--UCGCUUU----------UGCAG- -5'
24677 3' -53.1 NC_005264.1 + 5009 0.75 0.61307
Target:  5'- cCGC-GCCGGGGUCgccGCGGAGuACGUCa -3'
miRNA:   3'- -GCGcCGGUCCUAGau-CGCUUU-UGCAG- -5'
24677 3' -53.1 NC_005264.1 + 10858 0.69 0.910446
Target:  5'- -uCGaGCCAaGAUCUGGCGAAGAUGg- -3'
miRNA:   3'- gcGC-CGGUcCUAGAUCGCUUUUGCag -5'
24677 3' -53.1 NC_005264.1 + 13623 0.66 0.974949
Target:  5'- aCGCGGgCAGGggC-GGCGguAACGa- -3'
miRNA:   3'- -GCGCCgGUCCuaGaUCGCuuUUGCag -5'
24677 3' -53.1 NC_005264.1 + 14048 0.67 0.955478
Target:  5'- aCGUGGCgGGGccg-GGUGGGAACGUg -3'
miRNA:   3'- -GCGCCGgUCCuagaUCGCUUUUGCAg -5'
24677 3' -53.1 NC_005264.1 + 16911 0.67 0.966194
Target:  5'- cCGuCGGCCGcGGAcgaUGGCGGcgGCGUUc -3'
miRNA:   3'- -GC-GCCGGU-CCUag-AUCGCUuuUGCAG- -5'
24677 3' -53.1 NC_005264.1 + 23336 0.69 0.914662
Target:  5'- uCGCGGCCagcGGGGUCUgccccgaGGCGAuucucuccaGUCg -3'
miRNA:   3'- -GCGCCGG---UCCUAGA-------UCGCUuuug-----CAG- -5'
24677 3' -53.1 NC_005264.1 + 26159 0.67 0.961801
Target:  5'- cCGCGGCgAGGA-CUuucgcggcacugucGGCGggGcCGUUg -3'
miRNA:   3'- -GCGCCGgUCCUaGA--------------UCGCuuUuGCAG- -5'
24677 3' -53.1 NC_005264.1 + 32692 0.77 0.531103
Target:  5'- gGCGGCCAGGcuUUUAGCGggGGugaggUGUCa -3'
miRNA:   3'- gCGCCGGUCCu-AGAUCGCuuUU-----GCAG- -5'
24677 3' -53.1 NC_005264.1 + 34530 0.71 0.837792
Target:  5'- uGCGGUUGGGcgUUGGCGggGuACGUg -3'
miRNA:   3'- gCGCCGGUCCuaGAUCGCuuU-UGCAg -5'
24677 3' -53.1 NC_005264.1 + 38365 0.74 0.685643
Target:  5'- gGCGGUUAGGAccuccUCcGGCGAGAGCGg- -3'
miRNA:   3'- gCGCCGGUCCU-----AGaUCGCUUUUGCag -5'
24677 3' -53.1 NC_005264.1 + 39215 0.66 0.974949
Target:  5'- aCGCcGCCGcGGcgCUGGCGggGAgGg- -3'
miRNA:   3'- -GCGcCGGU-CCuaGAUCGCuuUUgCag -5'
24677 3' -53.1 NC_005264.1 + 39864 0.67 0.950189
Target:  5'- gCGCGGCCAGGAcguuccucuacccuUCUugacGGCGGccacccugAGAaaaGUCg -3'
miRNA:   3'- -GCGCCGGUCCU--------------AGA----UCGCU--------UUUg--CAG- -5'
24677 3' -53.1 NC_005264.1 + 41653 0.68 0.927663
Target:  5'- gCGCGGCCGGG-UCUA---AGGACGUg -3'
miRNA:   3'- -GCGCCGGUCCuAGAUcgcUUUUGCAg -5'
24677 3' -53.1 NC_005264.1 + 47016 0.66 0.979783
Target:  5'- gCGCGGUCAGuccuggGGCGAGcGACGUUg -3'
miRNA:   3'- -GCGCCGGUCcuaga-UCGCUU-UUGCAG- -5'
24677 3' -53.1 NC_005264.1 + 48406 0.75 0.592344
Target:  5'- gGCGGCCAGGAgcgGGUGggGGCa-- -3'
miRNA:   3'- gCGCCGGUCCUagaUCGCuuUUGcag -5'
24677 3' -53.1 NC_005264.1 + 53071 0.68 0.927663
Target:  5'- gGUGGCCGcGGAcCcAGCGGGAGUGUCu -3'
miRNA:   3'- gCGCCGGU-CCUaGaUCGCUUUUGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.