miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24677 3' -53.1 NC_005264.1 + 53208 0.66 0.974949
Target:  5'- aCGUGGCCgAGGuaguggacgcguAUCUccGCGAAAGCGg- -3'
miRNA:   3'- -GCGCCGG-UCC------------UAGAu-CGCUUUUGCag -5'
24677 3' -53.1 NC_005264.1 + 55168 0.66 0.972238
Target:  5'- uGCGGCCucuGGGcgCggcugaaggcGGCGAccgcgAAACGUCg -3'
miRNA:   3'- gCGCCGG---UCCuaGa---------UCGCU-----UUUGCAG- -5'
24677 3' -53.1 NC_005264.1 + 56605 0.68 0.92217
Target:  5'- gCGCGGCCcaucuGGGAUCUuGCaau--CGUCg -3'
miRNA:   3'- -GCGCCGG-----UCCUAGAuCGcuuuuGCAG- -5'
24677 3' -53.1 NC_005264.1 + 62229 0.67 0.962848
Target:  5'- cCGCGGCCgcuucGGGGUCgucgguauccuUGGCGAcgguuuccgAGACGaUCg -3'
miRNA:   3'- -GCGCCGG-----UCCUAG-----------AUCGCU---------UUUGC-AG- -5'
24677 3' -53.1 NC_005264.1 + 63639 0.7 0.876923
Target:  5'- aGCGGCCGcGGAggcCU-GCGAGGaccccACGUCu -3'
miRNA:   3'- gCGCCGGU-CCUa--GAuCGCUUU-----UGCAG- -5'
24677 3' -53.1 NC_005264.1 + 65248 0.7 0.884096
Target:  5'- cCGCGGCCgAGGAagcgguacgguUCUAGCucu-ACGUUa -3'
miRNA:   3'- -GCGCCGG-UCCU-----------AGAUCGcuuuUGCAG- -5'
24677 3' -53.1 NC_005264.1 + 66217 0.68 0.92217
Target:  5'- cCGCGGCCagcgaAGGAcUUGGCGAGcuGCGg- -3'
miRNA:   3'- -GCGCCGG-----UCCUaGAUCGCUUu-UGCag -5'
24677 3' -53.1 NC_005264.1 + 67730 0.69 0.890356
Target:  5'- gGCGGCUucGGGGcaaaggcUCUcAGCGAAAucaggGCGUCg -3'
miRNA:   3'- gCGCCGG--UCCU-------AGA-UCGCUUU-----UGCAG- -5'
24677 3' -53.1 NC_005264.1 + 71816 0.67 0.951445
Target:  5'- aGCGGCCgaagccgcccgcGGGGUC--GCGAAuaacgacGCGUCg -3'
miRNA:   3'- gCGCCGG------------UCCUAGauCGCUUu------UGCAG- -5'
24677 3' -53.1 NC_005264.1 + 73063 0.66 0.969322
Target:  5'- uGCGGCCAGaGAcgUGGCGua---GUCg -3'
miRNA:   3'- gCGCCGGUC-CUagAUCGCuuuugCAG- -5'
24677 3' -53.1 NC_005264.1 + 74508 0.66 0.971672
Target:  5'- gGCGGCCAGGcugaucgacAUCgacGCGAuacaaagcuuCGUCa -3'
miRNA:   3'- gCGCCGGUCC---------UAGau-CGCUuuu-------GCAG- -5'
24677 3' -53.1 NC_005264.1 + 75235 0.68 0.942664
Target:  5'- gCGCGGCCAGG-UCguccGCGuuugccggcaAGcGCGUCg -3'
miRNA:   3'- -GCGCCGGUCCuAGau--CGC----------UUuUGCAG- -5'
24677 3' -53.1 NC_005264.1 + 76113 0.66 0.975977
Target:  5'- gCGCGGCaucagagGGGGUCUGcagaucuugcgcgacGCGGuacACGUCg -3'
miRNA:   3'- -GCGCCGg------UCCUAGAU---------------CGCUuu-UGCAG- -5'
24677 3' -53.1 NC_005264.1 + 76928 0.68 0.942664
Target:  5'- aCGCGGUCAGaGUC-AGCGccuGCGUUa -3'
miRNA:   3'- -GCGCCGGUCcUAGaUCGCuuuUGCAG- -5'
24677 3' -53.1 NC_005264.1 + 77999 0.69 0.89104
Target:  5'- --aGGCCGcGAUCgcgGGCGAucACGUCg -3'
miRNA:   3'- gcgCCGGUcCUAGa--UCGCUuuUGCAG- -5'
24677 3' -53.1 NC_005264.1 + 82063 0.69 0.910446
Target:  5'- -aCGGCCAGGccagaucUCUGcGCGGAGGgGUCg -3'
miRNA:   3'- gcGCCGGUCCu------AGAU-CGCUUUUgCAG- -5'
24677 3' -53.1 NC_005264.1 + 84968 0.79 0.425929
Target:  5'- uGCGGCCAGGcugCU-GCGuuAGCGUCg -3'
miRNA:   3'- gCGCCGGUCCua-GAuCGCuuUUGCAG- -5'
24677 3' -53.1 NC_005264.1 + 87651 0.68 0.937909
Target:  5'- uGgGGCgCGGGAcCUGGCGgcAACGg- -3'
miRNA:   3'- gCgCCG-GUCCUaGAUCGCuuUUGCag -5'
24677 3' -53.1 NC_005264.1 + 93001 0.68 0.937909
Target:  5'- aCGCGGCCG-----UAGCGggGGCaGUCa -3'
miRNA:   3'- -GCGCCGGUccuagAUCGCuuUUG-CAG- -5'
24677 3' -53.1 NC_005264.1 + 95304 0.68 0.937909
Target:  5'- uGCGaGCCAGGAUacaucccCGggGACGUg -3'
miRNA:   3'- gCGC-CGGUCCUAgauc---GCuuUUGCAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.