miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24677 3' -53.1 NC_005264.1 + 159656 0.7 0.845217
Target:  5'- aCGCGGCCAGGuUCUuugacaaGGCaAGGACG-Cg -3'
miRNA:   3'- -GCGCCGGUCCuAGA-------UCGcUUUUGCaG- -5'
24677 3' -53.1 NC_005264.1 + 158890 0.67 0.950189
Target:  5'- gCGCGGCCAGGAcguuccucuacccuUCUugacGGCGGccacccugAGAaaaGUCg -3'
miRNA:   3'- -GCGCCGGUCCU--------------AGA----UCGCU--------UUUg--CAG- -5'
24677 3' -53.1 NC_005264.1 + 158242 0.66 0.974949
Target:  5'- aCGCcGCCGcGGcgCUGGCGggGAgGg- -3'
miRNA:   3'- -GCGcCGGU-CCuaGAUCGCuuUUgCag -5'
24677 3' -53.1 NC_005264.1 + 157392 0.74 0.685643
Target:  5'- gGCGGUUAGGAccuccUCcGGCGAGAGCGg- -3'
miRNA:   3'- gCGCCGGUCCU-----AGaUCGCUUUUGCag -5'
24677 3' -53.1 NC_005264.1 + 155267 0.73 0.706102
Target:  5'- aGCGGCgCGGGGUaggcGGCGggGACGa- -3'
miRNA:   3'- gCGCCG-GUCCUAga--UCGCuuUUGCag -5'
24677 3' -53.1 NC_005264.1 + 153557 0.71 0.837792
Target:  5'- uGCGGUUGGGcgUUGGCGggGuACGUg -3'
miRNA:   3'- gCGCCGGUCCuaGAUCGCuuU-UGCAg -5'
24677 3' -53.1 NC_005264.1 + 153509 0.7 0.876923
Target:  5'- gGCGGCCGccc-CUGGCGggGACGa- -3'
miRNA:   3'- gCGCCGGUccuaGAUCGCuuUUGCag -5'
24677 3' -53.1 NC_005264.1 + 151054 0.71 0.80298
Target:  5'- uGCGGCgAGGcUCggccuaCGAGAGCGUCa -3'
miRNA:   3'- gCGCCGgUCCuAGauc---GCUUUUGCAG- -5'
24677 3' -53.1 NC_005264.1 + 149814 0.69 0.904218
Target:  5'- aGCGGCCguAGGGUCccGCGAc-ACGUa -3'
miRNA:   3'- gCGCCGG--UCCUAGauCGCUuuUGCAg -5'
24677 3' -53.1 NC_005264.1 + 139462 0.66 0.979783
Target:  5'- gGCGGCCAGGcguGUCUGGaucggaccauCGAGcACGc- -3'
miRNA:   3'- gCGCCGGUCC---UAGAUC----------GCUUuUGCag -5'
24677 3' -53.1 NC_005264.1 + 136797 0.68 0.927663
Target:  5'- gCGUGGCCGGGcggacaaagCUGGCGGAcgcuuGGCGa- -3'
miRNA:   3'- -GCGCCGGUCCua-------GAUCGCUU-----UUGCag -5'
24677 3' -53.1 NC_005264.1 + 136700 0.67 0.962848
Target:  5'- cCGCGGCCuGGGAcaUCaUGGCccuggagacgcgGAAGAgGUCg -3'
miRNA:   3'- -GCGCCGG-UCCU--AG-AUCG------------CUUUUgCAG- -5'
24677 3' -53.1 NC_005264.1 + 135946 0.71 0.829358
Target:  5'- gGCGGCCGGGggCgAGCGAAuuAC-UCg -3'
miRNA:   3'- gCGCCGGUCCuaGaUCGCUUu-UGcAG- -5'
24677 3' -53.1 NC_005264.1 + 135397 0.66 0.974949
Target:  5'- cCGCucGGCgCAGG-UCUGGCuGAAAGCcUCa -3'
miRNA:   3'- -GCG--CCG-GUCCuAGAUCG-CUUUUGcAG- -5'
24677 3' -53.1 NC_005264.1 + 133954 0.74 0.6959
Target:  5'- aGCuuGGCCGGGGUCUucGCGguGGCGUUc -3'
miRNA:   3'- gCG--CCGGUCCUAGAu-CGCuuUUGCAG- -5'
24677 3' -53.1 NC_005264.1 + 132870 0.66 0.978412
Target:  5'- aGCGGCCAGGGacgcggacauuggcaUgCUgugAGCGAAGGCu-- -3'
miRNA:   3'- gCGCCGGUCCU---------------A-GA---UCGCUUUUGcag -5'
24677 3' -53.1 NC_005264.1 + 132650 0.66 0.974949
Target:  5'- aCGCGGgCAGGggC-GGCGguAACGa- -3'
miRNA:   3'- -GCGCCgGUCCuaGaUCGCuuUUGCag -5'
24677 3' -53.1 NC_005264.1 + 129499 0.74 0.665002
Target:  5'- gGCGGCgCAGGGUUUGGCGGcgccggAGGCGa- -3'
miRNA:   3'- gCGCCG-GUCCUAGAUCGCU------UUUGCag -5'
24677 3' -53.1 NC_005264.1 + 127846 0.7 0.869524
Target:  5'- gGCGGCCGGcGGUCUAgaacccggcgcGCGAAuGGgGUCu -3'
miRNA:   3'- gCGCCGGUC-CUAGAU-----------CGCUU-UUgCAG- -5'
24677 3' -53.1 NC_005264.1 + 127699 0.7 0.884096
Target:  5'- cCGCGGCCAGGcc--GGgGAAGAauccCGUCa -3'
miRNA:   3'- -GCGCCGGUCCuagaUCgCUUUU----GCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.