miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24677 3' -53.1 NC_005264.1 + 124036 0.75 0.61307
Target:  5'- cCGC-GCCGGGGUCgccGCGGAGuACGUCa -3'
miRNA:   3'- -GCGcCGGUCCUAGau-CGCUUU-UGCAG- -5'
24677 3' -53.1 NC_005264.1 + 123514 0.66 0.969322
Target:  5'- uCGC-GCgAGGGUCgcgAGCGGAGgggggacuggGCGUCc -3'
miRNA:   3'- -GCGcCGgUCCUAGa--UCGCUUU----------UGCAG- -5'
24677 3' -53.1 NC_005264.1 + 122007 0.66 0.979783
Target:  5'- gGCGGCCggccauagcGGGAUCUugagucucGGCGAccccgcggcAAGCGg- -3'
miRNA:   3'- gCGCCGG---------UCCUAGA--------UCGCU---------UUUGCag -5'
24677 3' -53.1 NC_005264.1 + 121921 0.76 0.571737
Target:  5'- gCGCGGCgGGGAgggCgacGGCGAGAGCGa- -3'
miRNA:   3'- -GCGCCGgUCCUa--Ga--UCGCUUUUGCag -5'
24677 3' -53.1 NC_005264.1 + 120413 0.69 0.904218
Target:  5'- uCGCGGauCCGGGAg-UGGCGAGGACa-- -3'
miRNA:   3'- -GCGCC--GGUCCUagAUCGCUUUUGcag -5'
24677 3' -53.1 NC_005264.1 + 119190 0.69 0.89104
Target:  5'- aGCGGCCAacgcCUGGCGAagcGAGCGUa -3'
miRNA:   3'- gCGCCGGUccuaGAUCGCU---UUUGCAg -5'
24677 3' -53.1 NC_005264.1 + 118162 0.68 0.932909
Target:  5'- cCGUGGCCGcccauGUCUGGCGGcu-CGUCg -3'
miRNA:   3'- -GCGCCGGUcc---UAGAUCGCUuuuGCAG- -5'
24677 3' -53.1 NC_005264.1 + 117182 0.7 0.876923
Target:  5'- aGCGGgCCGGGGaa-GGCGAcucugccagGAACGUCa -3'
miRNA:   3'- gCGCC-GGUCCUagaUCGCU---------UUUGCAG- -5'
24677 3' -53.1 NC_005264.1 + 110585 0.66 0.972238
Target:  5'- cCGUGGCCGGGugaguaGGCGggGGCc-- -3'
miRNA:   3'- -GCGCCGGUCCuaga--UCGCuuUUGcag -5'
24677 3' -53.1 NC_005264.1 + 109572 1.1 0.005078
Target:  5'- gCGCGGCCAGGAUCUAGCGAAAACGUCu -3'
miRNA:   3'- -GCGCCGGUCCUAGAUCGCUUUUGCAG- -5'
24677 3' -53.1 NC_005264.1 + 100723 0.66 0.977219
Target:  5'- aCGUGGCUcuggagaGGGcgCUGGuCGAgcucgccgAGGCGUCa -3'
miRNA:   3'- -GCGCCGG-------UCCuaGAUC-GCU--------UUUGCAG- -5'
24677 3' -53.1 NC_005264.1 + 100484 0.7 0.854073
Target:  5'- gGCGGCCAGGGcccuggaggggUUgcgGGCGAAAGCc-- -3'
miRNA:   3'- gCGCCGGUCCU-----------AGa--UCGCUUUUGcag -5'
24677 3' -53.1 NC_005264.1 + 100094 0.7 0.861905
Target:  5'- gGCGGCCGcGGggCUcAGCGAcGACG-Cg -3'
miRNA:   3'- gCGCCGGU-CCuaGA-UCGCUuUUGCaG- -5'
24677 3' -53.1 NC_005264.1 + 95304 0.68 0.937909
Target:  5'- uGCGaGCCAGGAUacaucccCGggGACGUg -3'
miRNA:   3'- gCGC-CGGUCCUAgauc---GCuuUUGCAg -5'
24677 3' -53.1 NC_005264.1 + 93001 0.68 0.937909
Target:  5'- aCGCGGCCG-----UAGCGggGGCaGUCa -3'
miRNA:   3'- -GCGCCGGUccuagAUCGCuuUUG-CAG- -5'
24677 3' -53.1 NC_005264.1 + 87651 0.68 0.937909
Target:  5'- uGgGGCgCGGGAcCUGGCGgcAACGg- -3'
miRNA:   3'- gCgCCG-GUCCUaGAUCGCuuUUGCag -5'
24677 3' -53.1 NC_005264.1 + 84968 0.79 0.425929
Target:  5'- uGCGGCCAGGcugCU-GCGuuAGCGUCg -3'
miRNA:   3'- gCGCCGGUCCua-GAuCGCuuUUGCAG- -5'
24677 3' -53.1 NC_005264.1 + 82063 0.69 0.910446
Target:  5'- -aCGGCCAGGccagaucUCUGcGCGGAGGgGUCg -3'
miRNA:   3'- gcGCCGGUCCu------AGAU-CGCUUUUgCAG- -5'
24677 3' -53.1 NC_005264.1 + 77999 0.69 0.89104
Target:  5'- --aGGCCGcGAUCgcgGGCGAucACGUCg -3'
miRNA:   3'- gcgCCGGUcCUAGa--UCGCUuuUGCAG- -5'
24677 3' -53.1 NC_005264.1 + 76928 0.68 0.942664
Target:  5'- aCGCGGUCAGaGUC-AGCGccuGCGUUa -3'
miRNA:   3'- -GCGCCGGUCcUAGaUCGCuuuUGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.