miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24677 3' -53.1 NC_005264.1 + 109572 1.1 0.005078
Target:  5'- gCGCGGCCAGGAUCUAGCGAAAACGUCu -3'
miRNA:   3'- -GCGCCGGUCCUAGAUCGCUUUUGCAG- -5'
24677 3' -53.1 NC_005264.1 + 93001 0.68 0.937909
Target:  5'- aCGCGGCCG-----UAGCGggGGCaGUCa -3'
miRNA:   3'- -GCGCCGGUccuagAUCGCuuUUG-CAG- -5'
24677 3' -53.1 NC_005264.1 + 71816 0.67 0.951445
Target:  5'- aGCGGCCgaagccgcccgcGGGGUC--GCGAAuaacgacGCGUCg -3'
miRNA:   3'- gCGCCGG------------UCCUAGauCGCUUu------UGCAG- -5'
24677 3' -53.1 NC_005264.1 + 47016 0.66 0.979783
Target:  5'- gCGCGGUCAGuccuggGGCGAGcGACGUUg -3'
miRNA:   3'- -GCGCCGGUCcuaga-UCGCUU-UUGCAG- -5'
24677 3' -53.1 NC_005264.1 + 157392 0.74 0.685643
Target:  5'- gGCGGUUAGGAccuccUCcGGCGAGAGCGg- -3'
miRNA:   3'- gCGCCGGUCCU-----AGaUCGCUUUUGCag -5'
24677 3' -53.1 NC_005264.1 + 135946 0.71 0.829358
Target:  5'- gGCGGCCGGGggCgAGCGAAuuAC-UCg -3'
miRNA:   3'- gCGCCGGUCCuaGaUCGCUUu-UGcAG- -5'
24677 3' -53.1 NC_005264.1 + 63639 0.7 0.876923
Target:  5'- aGCGGCCGcGGAggcCU-GCGAGGaccccACGUCu -3'
miRNA:   3'- gCGCCGGU-CCUa--GAuCGCUUU-----UGCAG- -5'
24677 3' -53.1 NC_005264.1 + 67730 0.69 0.890356
Target:  5'- gGCGGCUucGGGGcaaaggcUCUcAGCGAAAucaggGCGUCg -3'
miRNA:   3'- gCGCCGG--UCCU-------AGA-UCGCUUU-----UGCAG- -5'
24677 3' -53.1 NC_005264.1 + 56605 0.68 0.92217
Target:  5'- gCGCGGCCcaucuGGGAUCUuGCaau--CGUCg -3'
miRNA:   3'- -GCGCCGG-----UCCUAGAuCGcuuuuGCAG- -5'
24677 3' -53.1 NC_005264.1 + 95304 0.68 0.937909
Target:  5'- uGCGaGCCAGGAUacaucccCGggGACGUg -3'
miRNA:   3'- gCGC-CGGUCCUAgauc---GCuuUUGCAg -5'
24677 3' -53.1 NC_005264.1 + 41653 0.68 0.927663
Target:  5'- gCGCGGCCGGG-UCUA---AGGACGUg -3'
miRNA:   3'- -GCGCCGGUCCuAGAUcgcUUUUGCAg -5'
24677 3' -53.1 NC_005264.1 + 10858 0.69 0.910446
Target:  5'- -uCGaGCCAaGAUCUGGCGAAGAUGg- -3'
miRNA:   3'- gcGC-CGGUcCUAGAUCGCUUUUGCag -5'
24677 3' -53.1 NC_005264.1 + 32692 0.77 0.531103
Target:  5'- gGCGGCCAGGcuUUUAGCGggGGugaggUGUCa -3'
miRNA:   3'- gCGCCGGUCCu-AGAUCGCuuUU-----GCAG- -5'
24677 3' -53.1 NC_005264.1 + 136797 0.68 0.927663
Target:  5'- gCGUGGCCGGGcggacaaagCUGGCGGAcgcuuGGCGa- -3'
miRNA:   3'- -GCGCCGGUCCua-------GAUCGCUU-----UUGCag -5'
24677 3' -53.1 NC_005264.1 + 121921 0.76 0.571737
Target:  5'- gCGCGGCgGGGAgggCgacGGCGAGAGCGa- -3'
miRNA:   3'- -GCGCCGgUCCUa--Ga--UCGCUUUUGCag -5'
24677 3' -53.1 NC_005264.1 + 120413 0.69 0.904218
Target:  5'- uCGCGGauCCGGGAg-UGGCGAGGACa-- -3'
miRNA:   3'- -GCGCC--GGUCCUagAUCGCUUUUGcag -5'
24677 3' -53.1 NC_005264.1 + 118162 0.68 0.932909
Target:  5'- cCGUGGCCGcccauGUCUGGCGGcu-CGUCg -3'
miRNA:   3'- -GCGCCGGUcc---UAGAUCGCUuuuGCAG- -5'
24677 3' -53.1 NC_005264.1 + 158890 0.67 0.950189
Target:  5'- gCGCGGCCAGGAcguuccucuacccuUCUugacGGCGGccacccugAGAaaaGUCg -3'
miRNA:   3'- -GCGCCGGUCCU--------------AGA----UCGCU--------UUUg--CAG- -5'
24677 3' -53.1 NC_005264.1 + 124036 0.75 0.61307
Target:  5'- cCGC-GCCGGGGUCgccGCGGAGuACGUCa -3'
miRNA:   3'- -GCGcCGGUCCUAGau-CGCUUU-UGCAG- -5'
24677 3' -53.1 NC_005264.1 + 153557 0.71 0.837792
Target:  5'- uGCGGUUGGGcgUUGGCGggGuACGUg -3'
miRNA:   3'- gCGCCGGUCCuaGAUCGCuuU-UGCAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.