miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24677 3' -53.1 NC_005264.1 + 158890 0.67 0.950189
Target:  5'- gCGCGGCCAGGAcguuccucuacccuUCUugacGGCGGccacccugAGAaaaGUCg -3'
miRNA:   3'- -GCGCCGGUCCU--------------AGA----UCGCU--------UUUg--CAG- -5'
24677 3' -53.1 NC_005264.1 + 110585 0.66 0.972238
Target:  5'- cCGUGGCCGGGugaguaGGCGggGGCc-- -3'
miRNA:   3'- -GCGCCGGUCCuaga--UCGCuuUUGcag -5'
24677 3' -53.1 NC_005264.1 + 93001 0.68 0.937909
Target:  5'- aCGCGGCCG-----UAGCGggGGCaGUCa -3'
miRNA:   3'- -GCGCCGGUccuagAUCGCuuUUG-CAG- -5'
24677 3' -53.1 NC_005264.1 + 121921 0.76 0.571737
Target:  5'- gCGCGGCgGGGAgggCgacGGCGAGAGCGa- -3'
miRNA:   3'- -GCGCCGgUCCUa--Ga--UCGCUUUUGCag -5'
24677 3' -53.1 NC_005264.1 + 55168 0.66 0.972238
Target:  5'- uGCGGCCucuGGGcgCggcugaaggcGGCGAccgcgAAACGUCg -3'
miRNA:   3'- gCGCCGG---UCCuaGa---------UCGCU-----UUUGCAG- -5'
24677 3' -53.1 NC_005264.1 + 16911 0.67 0.966194
Target:  5'- cCGuCGGCCGcGGAcgaUGGCGGcgGCGUUc -3'
miRNA:   3'- -GC-GCCGGU-CCUag-AUCGCUuuUGCAG- -5'
24677 3' -53.1 NC_005264.1 + 158242 0.66 0.974949
Target:  5'- aCGCcGCCGcGGcgCUGGCGggGAgGg- -3'
miRNA:   3'- -GCGcCGGU-CCuaGAUCGCuuUUgCag -5'
24677 3' -53.1 NC_005264.1 + 47016 0.66 0.979783
Target:  5'- gCGCGGUCAGuccuggGGCGAGcGACGUUg -3'
miRNA:   3'- -GCGCCGGUCcuaga-UCGCUU-UUGCAG- -5'
24677 3' -53.1 NC_005264.1 + 32692 0.77 0.531103
Target:  5'- gGCGGCCAGGcuUUUAGCGggGGugaggUGUCa -3'
miRNA:   3'- gCGCCGGUCCu-AGAUCGCuuUU-----GCAG- -5'
24677 3' -53.1 NC_005264.1 + 109572 1.1 0.005078
Target:  5'- gCGCGGCCAGGAUCUAGCGAAAACGUCu -3'
miRNA:   3'- -GCGCCGGUCCUAGAUCGCUUUUGCAG- -5'
24677 3' -53.1 NC_005264.1 + 157392 0.74 0.685643
Target:  5'- gGCGGUUAGGAccuccUCcGGCGAGAGCGg- -3'
miRNA:   3'- gCGCCGGUCCU-----AGaUCGCUUUUGCag -5'
24677 3' -53.1 NC_005264.1 + 124036 0.75 0.61307
Target:  5'- cCGC-GCCGGGGUCgccGCGGAGuACGUCa -3'
miRNA:   3'- -GCGcCGGUCCUAGau-CGCUUU-UGCAG- -5'
24677 3' -53.1 NC_005264.1 + 13623 0.66 0.974949
Target:  5'- aCGCGGgCAGGggC-GGCGguAACGa- -3'
miRNA:   3'- -GCGCCgGUCCuaGaUCGCuuUUGCag -5'
24677 3' -53.1 NC_005264.1 + 100484 0.7 0.854073
Target:  5'- gGCGGCCAGGGcccuggaggggUUgcgGGCGAAAGCc-- -3'
miRNA:   3'- gCGCCGGUCCU-----------AGa--UCGCUUUUGcag -5'
24677 3' -53.1 NC_005264.1 + 100094 0.7 0.861905
Target:  5'- gGCGGCCGcGGggCUcAGCGAcGACG-Cg -3'
miRNA:   3'- gCGCCGGU-CCuaGA-UCGCUuUUGCaG- -5'
24677 3' -53.1 NC_005264.1 + 127846 0.7 0.869524
Target:  5'- gGCGGCCGGcGGUCUAgaacccggcgcGCGAAuGGgGUCu -3'
miRNA:   3'- gCGCCGGUC-CUAGAU-----------CGCUU-UUgCAG- -5'
24677 3' -53.1 NC_005264.1 + 117182 0.7 0.876923
Target:  5'- aGCGGgCCGGGGaa-GGCGAcucugccagGAACGUCa -3'
miRNA:   3'- gCGCC-GGUCCUagaUCGCU---------UUUGCAG- -5'
24677 3' -53.1 NC_005264.1 + 153509 0.7 0.876923
Target:  5'- gGCGGCCGccc-CUGGCGggGACGa- -3'
miRNA:   3'- gCGCCGGUccuaGAUCGCuuUUGCag -5'
24677 3' -53.1 NC_005264.1 + 76928 0.68 0.942664
Target:  5'- aCGCGGUCAGaGUC-AGCGccuGCGUUa -3'
miRNA:   3'- -GCGCCGGUCcUAGaUCGCuuuUGCAG- -5'
24677 3' -53.1 NC_005264.1 + 75235 0.68 0.942664
Target:  5'- gCGCGGCCAGG-UCguccGCGuuugccggcaAGcGCGUCg -3'
miRNA:   3'- -GCGCCGGUCCuAGau--CGC----------UUuUGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.