miRNA display CGI


Results 41 - 60 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24677 3' -53.1 NC_005264.1 + 135397 0.66 0.974949
Target:  5'- cCGCucGGCgCAGG-UCUGGCuGAAAGCcUCa -3'
miRNA:   3'- -GCG--CCG-GUCCuAGAUCG-CUUUUGcAG- -5'
24677 3' -53.1 NC_005264.1 + 76113 0.66 0.975977
Target:  5'- gCGCGGCaucagagGGGGUCUGcagaucuugcgcgacGCGGuacACGUCg -3'
miRNA:   3'- -GCGCCGg------UCCUAGAU---------------CGCUuu-UGCAG- -5'
24677 3' -53.1 NC_005264.1 + 117182 0.7 0.876923
Target:  5'- aGCGGgCCGGGGaa-GGCGAcucugccagGAACGUCa -3'
miRNA:   3'- gCGCC-GGUCCUagaUCGCU---------UUUGCAG- -5'
24677 3' -53.1 NC_005264.1 + 2728 0.66 0.977461
Target:  5'- cCGCGGCCGGGcccgucuUCUAGguuuaaCGGc-GCGUCc -3'
miRNA:   3'- -GCGCCGGUCCu------AGAUC------GCUuuUGCAG- -5'
24677 3' -53.1 NC_005264.1 + 153509 0.7 0.876923
Target:  5'- gGCGGCCGccc-CUGGCGggGACGa- -3'
miRNA:   3'- gCGCCGGUccuaGAUCGCuuUUGCag -5'
24677 3' -53.1 NC_005264.1 + 39864 0.67 0.950189
Target:  5'- gCGCGGCCAGGAcguuccucuacccuUCUugacGGCGGccacccugAGAaaaGUCg -3'
miRNA:   3'- -GCGCCGGUCCU--------------AGA----UCGCU--------UUUg--CAG- -5'
24677 3' -53.1 NC_005264.1 + 76928 0.68 0.942664
Target:  5'- aCGCGGUCAGaGUC-AGCGccuGCGUUa -3'
miRNA:   3'- -GCGCCGGUCcUAGaUCGCuuuUGCAG- -5'
24677 3' -53.1 NC_005264.1 + 75235 0.68 0.942664
Target:  5'- gCGCGGCCAGG-UCguccGCGuuugccggcaAGcGCGUCg -3'
miRNA:   3'- -GCGCCGGUCCuAGau--CGC----------UUuUGCAG- -5'
24677 3' -53.1 NC_005264.1 + 149814 0.69 0.904218
Target:  5'- aGCGGCCguAGGGUCccGCGAc-ACGUa -3'
miRNA:   3'- gCGCCGG--UCCUAGauCGCUuuUGCAg -5'
24677 3' -53.1 NC_005264.1 + 1386 0.69 0.904218
Target:  5'- uCGCGGauCCGGGAg-UGGCGAGGACa-- -3'
miRNA:   3'- -GCGCC--GGUCCUagAUCGCUUUUGcag -5'
24677 3' -53.1 NC_005264.1 + 38365 0.74 0.685643
Target:  5'- gGCGGUUAGGAccuccUCcGGCGAGAGCGg- -3'
miRNA:   3'- gCGCCGGUCCU-----AGaUCGCUUUUGCag -5'
24677 3' -53.1 NC_005264.1 + 129499 0.74 0.665002
Target:  5'- gGCGGCgCAGGGUUUGGCGGcgccggAGGCGa- -3'
miRNA:   3'- gCGCCG-GUCCUAGAUCGCU------UUUGCag -5'
24677 3' -53.1 NC_005264.1 + 5009 0.75 0.61307
Target:  5'- cCGC-GCCGGGGUCgccGCGGAGuACGUCa -3'
miRNA:   3'- -GCGcCGGUCCUAGau-CGCUUU-UGCAG- -5'
24677 3' -53.1 NC_005264.1 + 48406 0.75 0.592344
Target:  5'- gGCGGCCAGGAgcgGGUGggGGCa-- -3'
miRNA:   3'- gCGCCGGUCCUagaUCGCuuUUGcag -5'
24677 3' -53.1 NC_005264.1 + 2895 0.76 0.571737
Target:  5'- gCGCGGCgGGGAgggCgacGGCGAGAGCGa- -3'
miRNA:   3'- -GCGCCGgUCCUa--Ga--UCGCUUUUGCag -5'
24677 3' -53.1 NC_005264.1 + 84968 0.79 0.425929
Target:  5'- uGCGGCCAGGcugCU-GCGuuAGCGUCg -3'
miRNA:   3'- gCGCCGGUCCua-GAuCGCuuUUGCAG- -5'
24677 3' -53.1 NC_005264.1 + 82063 0.69 0.910446
Target:  5'- -aCGGCCAGGccagaucUCUGcGCGGAGGgGUCg -3'
miRNA:   3'- gcGCCGGUCCu------AGAU-CGCUUUUgCAG- -5'
24677 3' -53.1 NC_005264.1 + 119190 0.69 0.89104
Target:  5'- aGCGGCCAacgcCUGGCGAagcGAGCGUa -3'
miRNA:   3'- gCGCCGGUccuaGAUCGCU---UUUGCAg -5'
24677 3' -53.1 NC_005264.1 + 127699 0.7 0.884096
Target:  5'- cCGCGGCCAGGcc--GGgGAAGAauccCGUCa -3'
miRNA:   3'- -GCGCCGGUCCuagaUCgCUUUU----GCAG- -5'
24677 3' -53.1 NC_005264.1 + 100484 0.7 0.854073
Target:  5'- gGCGGCCAGGGcccuggaggggUUgcgGGCGAAAGCc-- -3'
miRNA:   3'- gCGCCGGUCCU-----------AGa--UCGCUUUUGcag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.