Results 1 - 20 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24677 | 3' | -53.1 | NC_005264.1 | + | 149814 | 0.69 | 0.904218 |
Target: 5'- aGCGGCCguAGGGUCccGCGAc-ACGUa -3' miRNA: 3'- gCGCCGG--UCCUAGauCGCUuuUGCAg -5' |
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24677 | 3' | -53.1 | NC_005264.1 | + | 39864 | 0.67 | 0.950189 |
Target: 5'- gCGCGGCCAGGAcguuccucuacccuUCUugacGGCGGccacccugAGAaaaGUCg -3' miRNA: 3'- -GCGCCGGUCCU--------------AGA----UCGCU--------UUUg--CAG- -5' |
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24677 | 3' | -53.1 | NC_005264.1 | + | 76928 | 0.68 | 0.942664 |
Target: 5'- aCGCGGUCAGaGUC-AGCGccuGCGUUa -3' miRNA: 3'- -GCGCCGGUCcUAGaUCGCuuuUGCAG- -5' |
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24677 | 3' | -53.1 | NC_005264.1 | + | 75235 | 0.68 | 0.942664 |
Target: 5'- gCGCGGCCAGG-UCguccGCGuuugccggcaAGcGCGUCg -3' miRNA: 3'- -GCGCCGGUCCuAGau--CGC----------UUuUGCAG- -5' |
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24677 | 3' | -53.1 | NC_005264.1 | + | 87651 | 0.68 | 0.937909 |
Target: 5'- uGgGGCgCGGGAcCUGGCGgcAACGg- -3' miRNA: 3'- gCgCCG-GUCCUaGAUCGCuuUUGCag -5' |
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24677 | 3' | -53.1 | NC_005264.1 | + | 53071 | 0.68 | 0.927663 |
Target: 5'- gGUGGCCGcGGAcCcAGCGGGAGUGUCu -3' miRNA: 3'- gCGCCGGU-CCUaGaUCGCUUUUGCAG- -5' |
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24677 | 3' | -53.1 | NC_005264.1 | + | 23336 | 0.69 | 0.914662 |
Target: 5'- uCGCGGCCagcGGGGUCUgccccgaGGCGAuucucuccaGUCg -3' miRNA: 3'- -GCGCCGG---UCCUAGA-------UCGCUuuug-----CAG- -5' |
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24677 | 3' | -53.1 | NC_005264.1 | + | 82063 | 0.69 | 0.910446 |
Target: 5'- -aCGGCCAGGccagaucUCUGcGCGGAGGgGUCg -3' miRNA: 3'- gcGCCGGUCCu------AGAU-CGCUUUUgCAG- -5' |
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24677 | 3' | -53.1 | NC_005264.1 | + | 1386 | 0.69 | 0.904218 |
Target: 5'- uCGCGGauCCGGGAg-UGGCGAGGACa-- -3' miRNA: 3'- -GCGCC--GGUCCUagAUCGCUUUUGcag -5' |
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24677 | 3' | -53.1 | NC_005264.1 | + | 26159 | 0.67 | 0.961801 |
Target: 5'- cCGCGGCgAGGA-CUuucgcggcacugucGGCGggGcCGUUg -3' miRNA: 3'- -GCGCCGgUCCUaGA--------------UCGCuuUuGCAG- -5' |
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24677 | 3' | -53.1 | NC_005264.1 | + | 4487 | 0.66 | 0.969322 |
Target: 5'- uCGC-GCgAGGGUCgcgAGCGGAGgggggacuggGCGUCc -3' miRNA: 3'- -GCGcCGgUCCUAGa--UCGCUUU----------UGCAG- -5' |
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24677 | 3' | -53.1 | NC_005264.1 | + | 73063 | 0.66 | 0.969322 |
Target: 5'- uGCGGCCAGaGAcgUGGCGua---GUCg -3' miRNA: 3'- gCGCCGGUC-CUagAUCGCuuuugCAG- -5' |
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24677 | 3' | -53.1 | NC_005264.1 | + | 122007 | 0.66 | 0.979783 |
Target: 5'- gGCGGCCggccauagcGGGAUCUugagucucGGCGAccccgcggcAAGCGg- -3' miRNA: 3'- gCGCCGG---------UCCUAGA--------UCGCU---------UUUGCag -5' |
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24677 | 3' | -53.1 | NC_005264.1 | + | 2728 | 0.66 | 0.977461 |
Target: 5'- cCGCGGCCGGGcccgucuUCUAGguuuaaCGGc-GCGUCc -3' miRNA: 3'- -GCGCCGGUCCu------AGAUC------GCUuuUGCAG- -5' |
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24677 | 3' | -53.1 | NC_005264.1 | + | 100723 | 0.66 | 0.977219 |
Target: 5'- aCGUGGCUcuggagaGGGcgCUGGuCGAgcucgccgAGGCGUCa -3' miRNA: 3'- -GCGCCGG-------UCCuaGAUC-GCU--------UUUGCAG- -5' |
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24677 | 3' | -53.1 | NC_005264.1 | + | 76113 | 0.66 | 0.975977 |
Target: 5'- gCGCGGCaucagagGGGGUCUGcagaucuugcgcgacGCGGuacACGUCg -3' miRNA: 3'- -GCGCCGg------UCCUAGAU---------------CGCUuu-UGCAG- -5' |
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24677 | 3' | -53.1 | NC_005264.1 | + | 135397 | 0.66 | 0.974949 |
Target: 5'- cCGCucGGCgCAGG-UCUGGCuGAAAGCcUCa -3' miRNA: 3'- -GCG--CCG-GUCCuAGAUCG-CUUUUGcAG- -5' |
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24677 | 3' | -53.1 | NC_005264.1 | + | 13623 | 0.66 | 0.974949 |
Target: 5'- aCGCGGgCAGGggC-GGCGguAACGa- -3' miRNA: 3'- -GCGCCgGUCCuaGaUCGCuuUUGCag -5' |
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24677 | 3' | -53.1 | NC_005264.1 | + | 53208 | 0.66 | 0.974949 |
Target: 5'- aCGUGGCCgAGGuaguggacgcguAUCUccGCGAAAGCGg- -3' miRNA: 3'- -GCGCCGG-UCC------------UAGAu-CGCUUUUGCag -5' |
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24677 | 3' | -53.1 | NC_005264.1 | + | 39215 | 0.66 | 0.974949 |
Target: 5'- aCGCcGCCGcGGcgCUGGCGggGAgGg- -3' miRNA: 3'- -GCGcCGGU-CCuaGAUCGCuuUUgCag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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