miRNA display CGI


Results 1 - 20 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24677 5' -55.3 NC_005264.1 + 103779 0.66 0.955128
Target:  5'- cCUGCuCGCcaacacaagaUCGCGGuucGGAUGCGCGg- -3'
miRNA:   3'- -GGCG-GCGaa--------AGCGCC---UCUAUGCGCag -5'
24677 5' -55.3 NC_005264.1 + 28395 0.66 0.955128
Target:  5'- aUGCCGauccugggCGUGGGuAUGCGUGUCg -3'
miRNA:   3'- gGCGGCgaaa----GCGCCUcUAUGCGCAG- -5'
24677 5' -55.3 NC_005264.1 + 98230 0.66 0.955128
Target:  5'- -gGCCGCgc-UGCGGAGAgguuauggGCGCa-- -3'
miRNA:   3'- ggCGGCGaaaGCGCCUCUa-------UGCGcag -5'
24677 5' -55.3 NC_005264.1 + 46909 0.66 0.954743
Target:  5'- gCGCCGCgugUUCGCGGcucucaaGGAcugcUACGgGg- -3'
miRNA:   3'- gGCGGCGa--AAGCGCC-------UCU----AUGCgCag -5'
24677 5' -55.3 NC_005264.1 + 8895 0.66 0.951183
Target:  5'- aCGUacaaCGUg-UCGCuGGAGAcGCGCGUCu -3'
miRNA:   3'- gGCG----GCGaaAGCG-CCUCUaUGCGCAG- -5'
24677 5' -55.3 NC_005264.1 + 123196 0.66 0.951183
Target:  5'- aCGCCGCgg-UGUGGGGAaGCGgaggGUCc -3'
miRNA:   3'- gGCGGCGaaaGCGCCUCUaUGCg---CAG- -5'
24677 5' -55.3 NC_005264.1 + 101350 0.66 0.951183
Target:  5'- -aGCCGagacCGCGGG---GCGCGUCg -3'
miRNA:   3'- ggCGGCgaaaGCGCCUcuaUGCGCAG- -5'
24677 5' -55.3 NC_005264.1 + 4169 0.66 0.951183
Target:  5'- aCGCCGCgg-UGUGGGGAaGCGgaggGUCc -3'
miRNA:   3'- gGCGGCGaaaGCGCCUCUaUGCg---CAG- -5'
24677 5' -55.3 NC_005264.1 + 98321 0.66 0.947012
Target:  5'- uCCGCgGCgg-CGCGGAcaGAacaGCGCGg- -3'
miRNA:   3'- -GGCGgCGaaaGCGCCU--CUa--UGCGCag -5'
24677 5' -55.3 NC_005264.1 + 29918 0.66 0.947012
Target:  5'- cCCGUCGg---CGCuagGGAGGUACGCGc- -3'
miRNA:   3'- -GGCGGCgaaaGCG---CCUCUAUGCGCag -5'
24677 5' -55.3 NC_005264.1 + 78332 0.66 0.947012
Target:  5'- uUCGCacaucauCUcUCGCGGAGAUGCaGCGg- -3'
miRNA:   3'- -GGCGgc-----GAaAGCGCCUCUAUG-CGCag -5'
24677 5' -55.3 NC_005264.1 + 81827 0.66 0.947012
Target:  5'- gCGCCGCUggUUCgaccaccaagGCGGAGGccACgucgGCGUCg -3'
miRNA:   3'- gGCGGCGA--AAG----------CGCCUCUa-UG----CGCAG- -5'
24677 5' -55.3 NC_005264.1 + 45809 0.66 0.947012
Target:  5'- gCCGCCGCgcugaUCGCGcu-GUACuCGUCa -3'
miRNA:   3'- -GGCGGCGaa---AGCGCcucUAUGcGCAG- -5'
24677 5' -55.3 NC_005264.1 + 65374 0.66 0.946582
Target:  5'- gCCGCCGggUagagucUCGCaggcgacGGAGGUGCGgGUa -3'
miRNA:   3'- -GGCGGCgaA------AGCG-------CCUCUAUGCgCAg -5'
24677 5' -55.3 NC_005264.1 + 7618 0.66 0.946582
Target:  5'- cCCGCCGCagcaUCGCacugagucuuguaGaaauacacGGGAUACGUGUCg -3'
miRNA:   3'- -GGCGGCGaa--AGCG-------------C--------CUCUAUGCGCAG- -5'
24677 5' -55.3 NC_005264.1 + 7372 0.66 0.945716
Target:  5'- gCCGCCGCggUuuucauuucuucgaUCGCGGccccgGCGcCGUCg -3'
miRNA:   3'- -GGCGGCGa-A--------------AGCGCCucua-UGC-GCAG- -5'
24677 5' -55.3 NC_005264.1 + 88000 0.66 0.942612
Target:  5'- gCCGCCGCUacgagaugUCGCGuauGGGAaagcUACGCa-- -3'
miRNA:   3'- -GGCGGCGAa-------AGCGC---CUCU----AUGCGcag -5'
24677 5' -55.3 NC_005264.1 + 150866 0.66 0.942612
Target:  5'- gUGCCGCg--CGCGGcaAGAcauggGCGCGa- -3'
miRNA:   3'- gGCGGCGaaaGCGCC--UCUa----UGCGCag -5'
24677 5' -55.3 NC_005264.1 + 15356 0.66 0.942612
Target:  5'- uCCGCCGaacuugcccgUUCG-GGAGcgACGCGa- -3'
miRNA:   3'- -GGCGGCga--------AAGCgCCUCuaUGCGCag -5'
24677 5' -55.3 NC_005264.1 + 76691 0.66 0.942612
Target:  5'- uCUGCCcaGCUUggCGCGGAGcgcgGCGCa-- -3'
miRNA:   3'- -GGCGG--CGAAa-GCGCCUCua--UGCGcag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.