miRNA display CGI


Results 1 - 20 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24677 5' -55.3 NC_005264.1 + 46909 0.66 0.954743
Target:  5'- gCGCCGCgugUUCGCGGcucucaaGGAcugcUACGgGg- -3'
miRNA:   3'- gGCGGCGa--AAGCGCC-------UCU----AUGCgCag -5'
24677 5' -55.3 NC_005264.1 + 127358 0.66 0.937982
Target:  5'- gCCGUCGCgaucggcCGCGGcacucuCGCGUCa -3'
miRNA:   3'- -GGCGGCGaaa----GCGCCucuau-GCGCAG- -5'
24677 5' -55.3 NC_005264.1 + 1173 0.66 0.937982
Target:  5'- gCCGgCGCg--CGaUGGGGGUACGCa-- -3'
miRNA:   3'- -GGCgGCGaaaGC-GCCUCUAUGCGcag -5'
24677 5' -55.3 NC_005264.1 + 155944 0.66 0.937982
Target:  5'- -aGCCGCg--CGCuGGGAcUGCGCGg- -3'
miRNA:   3'- ggCGGCGaaaGCGcCUCU-AUGCGCag -5'
24677 5' -55.3 NC_005264.1 + 32869 0.66 0.93312
Target:  5'- aUCGUCGgUccCGCGGuGGUugGCuGUCg -3'
miRNA:   3'- -GGCGGCgAaaGCGCCuCUAugCG-CAG- -5'
24677 5' -55.3 NC_005264.1 + 31701 0.66 0.932621
Target:  5'- cCCGCCaaaggucGCg--CGCGGGGcGUAcuuguuCGCGUCg -3'
miRNA:   3'- -GGCGG-------CGaaaGCGCCUC-UAU------GCGCAG- -5'
24677 5' -55.3 NC_005264.1 + 150727 0.66 0.932621
Target:  5'- cCCGCCaaaggucGCg--CGCGGGGcGUAcuuguuCGCGUCg -3'
miRNA:   3'- -GGCGG-------CGaaaGCGCCUC-UAU------GCGCAG- -5'
24677 5' -55.3 NC_005264.1 + 19106 0.66 0.93312
Target:  5'- aCCGCgGCgg-CGCGGAGAcgaGCa-- -3'
miRNA:   3'- -GGCGgCGaaaGCGCCUCUaugCGcag -5'
24677 5' -55.3 NC_005264.1 + 33612 0.66 0.93312
Target:  5'- gCCGCCGCUaaagUUCGgccAGAUugGCGg- -3'
miRNA:   3'- -GGCGGCGA----AAGCgccUCUAugCGCag -5'
24677 5' -55.3 NC_005264.1 + 3790 0.66 0.937982
Target:  5'- aCCGCCGCcgaucugCGUGGcGGUcCGCGa- -3'
miRNA:   3'- -GGCGGCGaaa----GCGCCuCUAuGCGCag -5'
24677 5' -55.3 NC_005264.1 + 13430 0.66 0.937982
Target:  5'- aCCGCCGC---CGCcGAGAcgcgACGCGg- -3'
miRNA:   3'- -GGCGGCGaaaGCGcCUCUa---UGCGCag -5'
24677 5' -55.3 NC_005264.1 + 31840 0.66 0.942612
Target:  5'- gUGCCGCg--CGCGGcaAGAcauggGCGCGa- -3'
miRNA:   3'- gGCGGCGaaaGCGCC--UCUa----UGCGCag -5'
24677 5' -55.3 NC_005264.1 + 4169 0.66 0.951183
Target:  5'- aCGCCGCgg-UGUGGGGAaGCGgaggGUCc -3'
miRNA:   3'- gGCGGCGaaaGCGCCUCUaUGCg---CAG- -5'
24677 5' -55.3 NC_005264.1 + 101350 0.66 0.951183
Target:  5'- -aGCCGagacCGCGGG---GCGCGUCg -3'
miRNA:   3'- ggCGGCgaaaGCGCCUcuaUGCGCAG- -5'
24677 5' -55.3 NC_005264.1 + 81827 0.66 0.947012
Target:  5'- gCGCCGCUggUUCgaccaccaagGCGGAGGccACgucgGCGUCg -3'
miRNA:   3'- gGCGGCGA--AAG----------CGCCUCUa-UG----CGCAG- -5'
24677 5' -55.3 NC_005264.1 + 98321 0.66 0.947012
Target:  5'- uCCGCgGCgg-CGCGGAcaGAacaGCGCGg- -3'
miRNA:   3'- -GGCGgCGaaaGCGCCU--CUa--UGCGCag -5'
24677 5' -55.3 NC_005264.1 + 45809 0.66 0.947012
Target:  5'- gCCGCCGCgcugaUCGCGcu-GUACuCGUCa -3'
miRNA:   3'- -GGCGGCGaa---AGCGCcucUAUGcGCAG- -5'
24677 5' -55.3 NC_005264.1 + 94594 0.66 0.942612
Target:  5'- gCCGcCCGCgg-CGCGGGcauggcuuggcGGUGCgGCGUg -3'
miRNA:   3'- -GGC-GGCGaaaGCGCCU-----------CUAUG-CGCAg -5'
24677 5' -55.3 NC_005264.1 + 88000 0.66 0.942612
Target:  5'- gCCGCCGCUacgagaugUCGCGuauGGGAaagcUACGCa-- -3'
miRNA:   3'- -GGCGGCGAa-------AGCGC---CUCU----AUGCGcag -5'
24677 5' -55.3 NC_005264.1 + 34259 0.66 0.942612
Target:  5'- uCUGuaGCgaggCGCGG-GcgACGCGUCg -3'
miRNA:   3'- -GGCggCGaaa-GCGCCuCuaUGCGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.