Results 21 - 40 of 134 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
24677 | 5' | -55.3 | NC_005264.1 | + | 150866 | 0.66 | 0.942612 |
Target: 5'- gUGCCGCg--CGCGGcaAGAcauggGCGCGa- -3' miRNA: 3'- gGCGGCGaaaGCGCC--UCUa----UGCGCag -5' |
|||||||
24677 | 5' | -55.3 | NC_005264.1 | + | 76691 | 0.66 | 0.942612 |
Target: 5'- uCUGCCcaGCUUggCGCGGAGcgcgGCGCa-- -3' miRNA: 3'- -GGCGG--CGAAa-GCGCCUCua--UGCGcag -5' |
|||||||
24677 | 5' | -55.3 | NC_005264.1 | + | 34259 | 0.66 | 0.942612 |
Target: 5'- uCUGuaGCgaggCGCGG-GcgACGCGUCg -3' miRNA: 3'- -GGCggCGaaa-GCGCCuCuaUGCGCAG- -5' |
|||||||
24677 | 5' | -55.3 | NC_005264.1 | + | 88000 | 0.66 | 0.942612 |
Target: 5'- gCCGCCGCUacgagaugUCGCGuauGGGAaagcUACGCa-- -3' miRNA: 3'- -GGCGGCGAa-------AGCGC---CUCU----AUGCGcag -5' |
|||||||
24677 | 5' | -55.3 | NC_005264.1 | + | 94594 | 0.66 | 0.942612 |
Target: 5'- gCCGcCCGCgg-CGCGGGcauggcuuggcGGUGCgGCGUg -3' miRNA: 3'- -GGC-GGCGaaaGCGCCU-----------CUAUG-CGCAg -5' |
|||||||
24677 | 5' | -55.3 | NC_005264.1 | + | 45809 | 0.66 | 0.947012 |
Target: 5'- gCCGCCGCgcugaUCGCGcu-GUACuCGUCa -3' miRNA: 3'- -GGCGGCGaa---AGCGCcucUAUGcGCAG- -5' |
|||||||
24677 | 5' | -55.3 | NC_005264.1 | + | 98321 | 0.66 | 0.947012 |
Target: 5'- uCCGCgGCgg-CGCGGAcaGAacaGCGCGg- -3' miRNA: 3'- -GGCGgCGaaaGCGCCU--CUa--UGCGCag -5' |
|||||||
24677 | 5' | -55.3 | NC_005264.1 | + | 81827 | 0.66 | 0.947012 |
Target: 5'- gCGCCGCUggUUCgaccaccaagGCGGAGGccACgucgGCGUCg -3' miRNA: 3'- gGCGGCGA--AAG----------CGCCUCUa-UG----CGCAG- -5' |
|||||||
24677 | 5' | -55.3 | NC_005264.1 | + | 101350 | 0.66 | 0.951183 |
Target: 5'- -aGCCGagacCGCGGG---GCGCGUCg -3' miRNA: 3'- ggCGGCgaaaGCGCCUcuaUGCGCAG- -5' |
|||||||
24677 | 5' | -55.3 | NC_005264.1 | + | 4169 | 0.66 | 0.951183 |
Target: 5'- aCGCCGCgg-UGUGGGGAaGCGgaggGUCc -3' miRNA: 3'- gGCGGCGaaaGCGCCUCUaUGCg---CAG- -5' |
|||||||
24677 | 5' | -55.3 | NC_005264.1 | + | 31840 | 0.66 | 0.942612 |
Target: 5'- gUGCCGCg--CGCGGcaAGAcauggGCGCGa- -3' miRNA: 3'- gGCGGCGaaaGCGCC--UCUa----UGCGCag -5' |
|||||||
24677 | 5' | -55.3 | NC_005264.1 | + | 13430 | 0.66 | 0.937982 |
Target: 5'- aCCGCCGC---CGCcGAGAcgcgACGCGg- -3' miRNA: 3'- -GGCGGCGaaaGCGcCUCUa---UGCGCag -5' |
|||||||
24677 | 5' | -55.3 | NC_005264.1 | + | 33612 | 0.66 | 0.93312 |
Target: 5'- gCCGCCGCUaaagUUCGgccAGAUugGCGg- -3' miRNA: 3'- -GGCGGCGA----AAGCgccUCUAugCGCag -5' |
|||||||
24677 | 5' | -55.3 | NC_005264.1 | + | 19106 | 0.66 | 0.93312 |
Target: 5'- aCCGCgGCgg-CGCGGAGAcgaGCa-- -3' miRNA: 3'- -GGCGgCGaaaGCGCCUCUaugCGcag -5' |
|||||||
24677 | 5' | -55.3 | NC_005264.1 | + | 31701 | 0.66 | 0.932621 |
Target: 5'- cCCGCCaaaggucGCg--CGCGGGGcGUAcuuguuCGCGUCg -3' miRNA: 3'- -GGCGG-------CGaaaGCGCCUC-UAU------GCGCAG- -5' |
|||||||
24677 | 5' | -55.3 | NC_005264.1 | + | 32869 | 0.66 | 0.93312 |
Target: 5'- aUCGUCGgUccCGCGGuGGUugGCuGUCg -3' miRNA: 3'- -GGCGGCgAaaGCGCCuCUAugCG-CAG- -5' |
|||||||
24677 | 5' | -55.3 | NC_005264.1 | + | 155944 | 0.66 | 0.937982 |
Target: 5'- -aGCCGCg--CGCuGGGAcUGCGCGg- -3' miRNA: 3'- ggCGGCGaaaGCGcCUCU-AUGCGCag -5' |
|||||||
24677 | 5' | -55.3 | NC_005264.1 | + | 1173 | 0.66 | 0.937982 |
Target: 5'- gCCGgCGCg--CGaUGGGGGUACGCa-- -3' miRNA: 3'- -GGCgGCGaaaGC-GCCUCUAUGCGcag -5' |
|||||||
24677 | 5' | -55.3 | NC_005264.1 | + | 127358 | 0.66 | 0.937982 |
Target: 5'- gCCGUCGCgaucggcCGCGGcacucuCGCGUCa -3' miRNA: 3'- -GGCGGCGaaa----GCGCCucuau-GCGCAG- -5' |
|||||||
24677 | 5' | -55.3 | NC_005264.1 | + | 3790 | 0.66 | 0.937982 |
Target: 5'- aCCGCCGCcgaucugCGUGGcGGUcCGCGa- -3' miRNA: 3'- -GGCGGCGaaa----GCGCCuCUAuGCGCag -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home