Results 41 - 60 of 134 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
24677 | 5' | -55.3 | NC_005264.1 | + | 45809 | 0.66 | 0.947012 |
Target: 5'- gCCGCCGCgcugaUCGCGcu-GUACuCGUCa -3' miRNA: 3'- -GGCGGCGaa---AGCGCcucUAUGcGCAG- -5' |
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24677 | 5' | -55.3 | NC_005264.1 | + | 30082 | 0.67 | 0.920496 |
Target: 5'- gCCGCCGCgcccggacagaaUCGCGagucGAGAUGCGgG-Cg -3' miRNA: 3'- -GGCGGCGaa----------AGCGC----CUCUAUGCgCaG- -5' |
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24677 | 5' | -55.3 | NC_005264.1 | + | 32693 | 0.67 | 0.922693 |
Target: 5'- gCgGCCagGCUUUUaGCGGGGGUGagGUGUCa -3' miRNA: 3'- -GgCGG--CGAAAG-CGCCUCUAUg-CGCAG- -5' |
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24677 | 5' | -55.3 | NC_005264.1 | + | 146510 | 0.67 | 0.899045 |
Target: 5'- -gGCCGCgcggUUC-CaGAGcUACGCGUCg -3' miRNA: 3'- ggCGGCGa---AAGcGcCUCuAUGCGCAG- -5' |
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24677 | 5' | -55.3 | NC_005264.1 | + | 122636 | 0.67 | 0.917129 |
Target: 5'- aCCGCCGCggggggcCGCGaGGGcggGCGCGc- -3' miRNA: 3'- -GGCGGCGaaa----GCGC-CUCua-UGCGCag -5' |
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24677 | 5' | -55.3 | NC_005264.1 | + | 47643 | 0.67 | 0.908948 |
Target: 5'- gUGCgGCUUcgcggaugUCGCGGAGugagaaucgcagACGCGUUg -3' miRNA: 3'- gGCGgCGAA--------AGCGCCUCua----------UGCGCAG- -5' |
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24677 | 5' | -55.3 | NC_005264.1 | + | 158571 | 0.67 | 0.899045 |
Target: 5'- gCCGCCGCcc-CGCGGuucccGCGCGg- -3' miRNA: 3'- -GGCGGCGaaaGCGCCucua-UGCGCag -5' |
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24677 | 5' | -55.3 | NC_005264.1 | + | 20631 | 0.67 | 0.911332 |
Target: 5'- aCCGCUGCc-UCGCG-AGAUuacacggaacCGCGUCg -3' miRNA: 3'- -GGCGGCGaaAGCGCcUCUAu---------GCGCAG- -5' |
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24677 | 5' | -55.3 | NC_005264.1 | + | 20265 | 0.67 | 0.922693 |
Target: 5'- gCGCgGCc-UCGCGGAGGggAC-CGUCu -3' miRNA: 3'- gGCGgCGaaAGCGCCUCUa-UGcGCAG- -5' |
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24677 | 5' | -55.3 | NC_005264.1 | + | 127387 | 0.67 | 0.902827 |
Target: 5'- aCCGUCGCUgaugcuuaccggCGcCGGAcGcgGCGCGUUg -3' miRNA: 3'- -GGCGGCGAaa----------GC-GCCU-CuaUGCGCAG- -5' |
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24677 | 5' | -55.3 | NC_005264.1 | + | 120787 | 0.67 | 0.922693 |
Target: 5'- gCGCCGCgggcaaCGCGauuGGAUaggccgcguGCGCGUCg -3' miRNA: 3'- gGCGGCGaaa---GCGCc--UCUA---------UGCGCAG- -5' |
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24677 | 5' | -55.3 | NC_005264.1 | + | 78000 | 0.67 | 0.917129 |
Target: 5'- -gGCCGCgaUCGCGGGcGAU-CaCGUCg -3' miRNA: 3'- ggCGGCGaaAGCGCCU-CUAuGcGCAG- -5' |
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24677 | 5' | -55.3 | NC_005264.1 | + | 3609 | 0.67 | 0.917129 |
Target: 5'- aCCGCCGCggggggcCGCGaGGGcggGCGCGc- -3' miRNA: 3'- -GGCGGCGaaa----GCGC-CUCua-UGCGCag -5' |
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24677 | 5' | -55.3 | NC_005264.1 | + | 111857 | 0.67 | 0.911332 |
Target: 5'- aCCGCUGCcggguaGCGGA---GCGUGUCu -3' miRNA: 3'- -GGCGGCGaaag--CGCCUcuaUGCGCAG- -5' |
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24677 | 5' | -55.3 | NC_005264.1 | + | 96478 | 0.67 | 0.911332 |
Target: 5'- uCCGUCGCgUUCGUGauaGAGGcgaGCGUCg -3' miRNA: 3'- -GGCGGCGaAAGCGC---CUCUaugCGCAG- -5' |
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24677 | 5' | -55.3 | NC_005264.1 | + | 151850 | 0.67 | 0.905303 |
Target: 5'- gCCGCCGCUccgGCGGcGAcACGUGg- -3' miRNA: 3'- -GGCGGCGAaagCGCCuCUaUGCGCag -5' |
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24677 | 5' | -55.3 | NC_005264.1 | + | 8360 | 0.67 | 0.902827 |
Target: 5'- aCCGUCGCUgaugcuuaccggCGcCGGAcGcgGCGCGUUg -3' miRNA: 3'- -GGCGGCGAaa----------GC-GCCU-CuaUGCGCAG- -5' |
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24677 | 5' | -55.3 | NC_005264.1 | + | 39544 | 0.67 | 0.899045 |
Target: 5'- gCCGCCGCcc-CGCGGuucccGCGCGg- -3' miRNA: 3'- -GGCGGCGaaaGCGCCucua-UGCGCag -5' |
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24677 | 5' | -55.3 | NC_005264.1 | + | 60956 | 0.67 | 0.922693 |
Target: 5'- uCCGCCGUgUUCGUGu-GGUugGUGgUCg -3' miRNA: 3'- -GGCGGCGaAAGCGCcuCUAugCGC-AG- -5' |
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24677 | 5' | -55.3 | NC_005264.1 | + | 7590 | 0.67 | 0.911332 |
Target: 5'- gCGCCGCU---GCGGAGAUGCu---- -3' miRNA: 3'- gGCGGCGAaagCGCCUCUAUGcgcag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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