Results 1 - 20 of 134 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
24677 | 5' | -55.3 | NC_005264.1 | + | 109613 | 1.1 | 0.003456 |
Target: 5'- uCCGCCGCUUUCGCGGAGAUACGCGUCc -3' miRNA: 3'- -GGCGGCGAAAGCGCCUCUAUGCGCAG- -5' |
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24677 | 5' | -55.3 | NC_005264.1 | + | 49481 | 0.78 | 0.379716 |
Target: 5'- gCGCCGUaUUCGaCGGgcagcAGGUGCGCGUCu -3' miRNA: 3'- gGCGGCGaAAGC-GCC-----UCUAUGCGCAG- -5' |
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24677 | 5' | -55.3 | NC_005264.1 | + | 95801 | 0.75 | 0.543341 |
Target: 5'- uCCGCCGCUUaCGuCGGGGGccUGCGCa-- -3' miRNA: 3'- -GGCGGCGAAaGC-GCCUCU--AUGCGcag -5' |
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24677 | 5' | -55.3 | NC_005264.1 | + | 11982 | 0.75 | 0.523761 |
Target: 5'- uUGCCGCg--CGCGGcacggcAGAgUACGCGUCa -3' miRNA: 3'- gGCGGCGaaaGCGCC------UCU-AUGCGCAG- -5' |
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24677 | 5' | -55.3 | NC_005264.1 | + | 131009 | 0.75 | 0.523761 |
Target: 5'- uUGCCGCg--CGCGGcacggcAGAgUACGCGUCa -3' miRNA: 3'- gGCGGCGaaaGCGCC------UCU-AUGCGCAG- -5' |
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24677 | 5' | -55.3 | NC_005264.1 | + | 55231 | 0.74 | 0.563155 |
Target: 5'- aCGCCGCUgaaGCGGAaGA-ACGCGUa -3' miRNA: 3'- gGCGGCGAaagCGCCU-CUaUGCGCAg -5' |
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24677 | 5' | -55.3 | NC_005264.1 | + | 154234 | 0.74 | 0.583158 |
Target: 5'- aCCGgUGCgcgUUGCGGAGGaacacGCGCGUCu -3' miRNA: 3'- -GGCgGCGaa-AGCGCCUCUa----UGCGCAG- -5' |
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24677 | 5' | -55.3 | NC_005264.1 | + | 106353 | 0.74 | 0.573136 |
Target: 5'- aCUGCCGCUUggCGCGGuuAGAUuucucCGCGUUc -3' miRNA: 3'- -GGCGGCGAAa-GCGCC--UCUAu----GCGCAG- -5' |
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24677 | 5' | -55.3 | NC_005264.1 | + | 157201 | 0.74 | 0.593214 |
Target: 5'- aCCGCCGCgc-UGUGGGGAcACcuaGCGUCg -3' miRNA: 3'- -GGCGGCGaaaGCGCCUCUaUG---CGCAG- -5' |
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24677 | 5' | -55.3 | NC_005264.1 | + | 38174 | 0.74 | 0.593214 |
Target: 5'- aCCGCCGCgc-UGUGGGGAcACcuaGCGUCg -3' miRNA: 3'- -GGCGGCGaaaGCGCCUCUaUG---CGCAG- -5' |
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24677 | 5' | -55.3 | NC_005264.1 | + | 159770 | 0.73 | 0.613402 |
Target: 5'- gCCGCCGCcagUCGCGGcGAgACaGCGUg -3' miRNA: 3'- -GGCGGCGaa-AGCGCCuCUaUG-CGCAg -5' |
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24677 | 5' | -55.3 | NC_005264.1 | + | 131265 | 0.73 | 0.623521 |
Target: 5'- cCCGCCGUaacugCGCGGGGuaACGCGcCa -3' miRNA: 3'- -GGCGGCGaaa--GCGCCUCuaUGCGCaG- -5' |
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24677 | 5' | -55.3 | NC_005264.1 | + | 40744 | 0.73 | 0.613402 |
Target: 5'- gCCGCCGCcagUCGCGGcGAgACaGCGUg -3' miRNA: 3'- -GGCGGCGaa-AGCGCCuCUaUG-CGCAg -5' |
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24677 | 5' | -55.3 | NC_005264.1 | + | 58994 | 0.72 | 0.678076 |
Target: 5'- aCCGCCcaaaguccuccaccaGaa-UCGCGGAGGcagGCGCGUCa -3' miRNA: 3'- -GGCGG---------------CgaaAGCGCCUCUa--UGCGCAG- -5' |
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24677 | 5' | -55.3 | NC_005264.1 | + | 147376 | 0.72 | 0.704039 |
Target: 5'- aUCGCCGCUUUCGCGucGucGCGCuuGUCc -3' miRNA: 3'- -GGCGGCGAAAGCGCcuCuaUGCG--CAG- -5' |
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24677 | 5' | -55.3 | NC_005264.1 | + | 128858 | 0.71 | 0.723745 |
Target: 5'- gCCGCCGCacgUUCGCGaGAGGgucaaGCGg- -3' miRNA: 3'- -GGCGGCGa--AAGCGC-CUCUaug--CGCag -5' |
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24677 | 5' | -55.3 | NC_005264.1 | + | 37597 | 0.71 | 0.743143 |
Target: 5'- gCgGCCGCg---GCGGGGGgucaaaggACGCGUCu -3' miRNA: 3'- -GgCGGCGaaagCGCCUCUa-------UGCGCAG- -5' |
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24677 | 5' | -55.3 | NC_005264.1 | + | 16170 | 0.71 | 0.713926 |
Target: 5'- aUGCCGCccugCGCGGAGGUcgguCGCGg- -3' miRNA: 3'- gGCGGCGaaa-GCGCCUCUAu---GCGCag -5' |
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24677 | 5' | -55.3 | NC_005264.1 | + | 9832 | 0.71 | 0.723745 |
Target: 5'- gCCGCCGCacgUUCGCGaGAGGgucaaGCGg- -3' miRNA: 3'- -GGCGGCGa--AAGCGC-CUCUaug--CGCag -5' |
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24677 | 5' | -55.3 | NC_005264.1 | + | 35005 | 0.71 | 0.733487 |
Target: 5'- aCCGCCgGCcgcCGCGGAGGcaACGCuGUCg -3' miRNA: 3'- -GGCGG-CGaaaGCGCCUCUa-UGCG-CAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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