Results 21 - 40 of 134 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24677 | 5' | -55.3 | NC_005264.1 | + | 9832 | 0.71 | 0.723745 |
Target: 5'- gCCGCCGCacgUUCGCGaGAGGgucaaGCGg- -3' miRNA: 3'- -GGCGGCGa--AAGCGC-CUCUaug--CGCag -5' |
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24677 | 5' | -55.3 | NC_005264.1 | + | 37597 | 0.71 | 0.743143 |
Target: 5'- gCgGCCGCg---GCGGGGGgucaaaggACGCGUCu -3' miRNA: 3'- -GgCGGCGaaagCGCCUCUa-------UGCGCAG- -5' |
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24677 | 5' | -55.3 | NC_005264.1 | + | 92714 | 0.7 | 0.807577 |
Target: 5'- uUGCCGCa--CGCGGGaGUACGCGg- -3' miRNA: 3'- gGCGGCGaaaGCGCCUcUAUGCGCag -5' |
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24677 | 5' | -55.3 | NC_005264.1 | + | 144801 | 0.7 | 0.788915 |
Target: 5'- gCCGCCGC-UUCGCGucGGcacgcacUugGUGUCg -3' miRNA: 3'- -GGCGGCGaAAGCGCcuCU-------AugCGCAG- -5' |
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24677 | 5' | -55.3 | NC_005264.1 | + | 61928 | 0.7 | 0.786198 |
Target: 5'- gCCGCCGCUUgCGCGaAGAggaacugcuagagACGCGg- -3' miRNA: 3'- -GGCGGCGAAaGCGCcUCUa------------UGCGCag -5' |
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24677 | 5' | -55.3 | NC_005264.1 | + | 158244 | 0.7 | 0.771504 |
Target: 5'- gCCGCCGCggcgcUgGCGGGGAgggccUGCGUUc -3' miRNA: 3'- -GGCGGCGaa---AgCGCCUCUau---GCGCAG- -5' |
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24677 | 5' | -55.3 | NC_005264.1 | + | 71825 | 0.7 | 0.777053 |
Target: 5'- -aGCCGCc--CGCGGGGucgcgaauaacgACGCGUCg -3' miRNA: 3'- ggCGGCGaaaGCGCCUCua----------UGCGCAG- -5' |
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24677 | 5' | -55.3 | NC_005264.1 | + | 159672 | 0.7 | 0.780727 |
Target: 5'- gCCGUCGCg--CGCGGAGGguCGcCGUUu -3' miRNA: 3'- -GGCGGCGaaaGCGCCUCUauGC-GCAG- -5' |
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24677 | 5' | -55.3 | NC_005264.1 | + | 18922 | 0.7 | 0.789819 |
Target: 5'- -aGCCGgccuaGCGGAGAgcUAUGCGUCa -3' miRNA: 3'- ggCGGCgaaagCGCCUCU--AUGCGCAG- -5' |
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24677 | 5' | -55.3 | NC_005264.1 | + | 92094 | 0.7 | 0.798771 |
Target: 5'- uUGCCGCUUgcUCGCcu--GUACGCGUCu -3' miRNA: 3'- gGCGGCGAA--AGCGccucUAUGCGCAG- -5' |
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24677 | 5' | -55.3 | NC_005264.1 | + | 39217 | 0.7 | 0.771504 |
Target: 5'- gCCGCCGCggcgcUgGCGGGGAgggccUGCGUUc -3' miRNA: 3'- -GGCGGCGaa---AgCGCCUCUau---GCGCAG- -5' |
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24677 | 5' | -55.3 | NC_005264.1 | + | 90975 | 0.7 | 0.797883 |
Target: 5'- cCCGCgUGCcgUCGCGGAacaccgccgccgcGA-ACGCGUCg -3' miRNA: 3'- -GGCG-GCGaaAGCGCCU-------------CUaUGCGCAG- -5' |
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24677 | 5' | -55.3 | NC_005264.1 | + | 104334 | 0.7 | 0.771504 |
Target: 5'- aCGCCGCUUaCGaGGAGGUGcCGC-UCa -3' miRNA: 3'- gGCGGCGAAaGCgCCUCUAU-GCGcAG- -5' |
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24677 | 5' | -55.3 | NC_005264.1 | + | 79397 | 0.7 | 0.807577 |
Target: 5'- aCCGCCGCgggCGUGGcGAggcCGCGg- -3' miRNA: 3'- -GGCGGCGaaaGCGCCuCUau-GCGCag -5' |
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24677 | 5' | -55.3 | NC_005264.1 | + | 154901 | 0.7 | 0.780727 |
Target: 5'- aCGCCGCggcCGUGGAcg-ACGCGUg -3' miRNA: 3'- gGCGGCGaaaGCGCCUcuaUGCGCAg -5' |
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24677 | 5' | -55.3 | NC_005264.1 | + | 60991 | 0.7 | 0.798771 |
Target: 5'- cCUGCUGCUcg-GUGGAGuu-CGCGUCa -3' miRNA: 3'- -GGCGGCGAaagCGCCUCuauGCGCAG- -5' |
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24677 | 5' | -55.3 | NC_005264.1 | + | 31468 | 0.69 | 0.849112 |
Target: 5'- gUCGCCGaugggCGUGGAuGGUGCGCccaGUCa -3' miRNA: 3'- -GGCGGCgaaa-GCGCCU-CUAUGCG---CAG- -5' |
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24677 | 5' | -55.3 | NC_005264.1 | + | 49868 | 0.69 | 0.849112 |
Target: 5'- aCGCCGCgca-GCGu--AUACGCGUCa -3' miRNA: 3'- gGCGGCGaaagCGCcucUAUGCGCAG- -5' |
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24677 | 5' | -55.3 | NC_005264.1 | + | 102873 | 0.69 | 0.85687 |
Target: 5'- aCCGCCGCgug-GCuGAGcgGCGCGg- -3' miRNA: 3'- -GGCGGCGaaagCGcCUCuaUGCGCag -5' |
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24677 | 5' | -55.3 | NC_005264.1 | + | 158041 | 0.69 | 0.816226 |
Target: 5'- gCGUgGCUUcugagUCgGUGGAGGUGCGCGa- -3' miRNA: 3'- gGCGgCGAA-----AG-CGCCUCUAUGCGCag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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