miRNA display CGI


Results 21 - 40 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24677 5' -55.3 NC_005264.1 + 139537 0.71 0.743143
Target:  5'- cCCGCCGCacUCGUGGcGAUGuuUGCGcUCg -3'
miRNA:   3'- -GGCGGCGaaAGCGCCuCUAU--GCGC-AG- -5'
24677 5' -55.3 NC_005264.1 + 156624 0.71 0.743143
Target:  5'- gCgGCCGCg---GCGGGGGgucaaaggACGCGUCu -3'
miRNA:   3'- -GgCGGCGaaagCGCCUCUa-------UGCGCAG- -5'
24677 5' -55.3 NC_005264.1 + 39217 0.7 0.771504
Target:  5'- gCCGCCGCggcgcUgGCGGGGAgggccUGCGUUc -3'
miRNA:   3'- -GGCGGCGaa---AgCGCCUCUau---GCGCAG- -5'
24677 5' -55.3 NC_005264.1 + 104334 0.7 0.771504
Target:  5'- aCGCCGCUUaCGaGGAGGUGcCGC-UCa -3'
miRNA:   3'- gGCGGCGAAaGCgCCUCUAU-GCGcAG- -5'
24677 5' -55.3 NC_005264.1 + 158244 0.7 0.771504
Target:  5'- gCCGCCGCggcgcUgGCGGGGAgggccUGCGUUc -3'
miRNA:   3'- -GGCGGCGaa---AgCGCCUCUau---GCGCAG- -5'
24677 5' -55.3 NC_005264.1 + 71825 0.7 0.777053
Target:  5'- -aGCCGCc--CGCGGGGucgcgaauaacgACGCGUCg -3'
miRNA:   3'- ggCGGCGaaaGCGCCUCua----------UGCGCAG- -5'
24677 5' -55.3 NC_005264.1 + 159672 0.7 0.780727
Target:  5'- gCCGUCGCg--CGCGGAGGguCGcCGUUu -3'
miRNA:   3'- -GGCGGCGaaaGCGCCUCUauGC-GCAG- -5'
24677 5' -55.3 NC_005264.1 + 154901 0.7 0.780727
Target:  5'- aCGCCGCggcCGUGGAcg-ACGCGUg -3'
miRNA:   3'- gGCGGCGaaaGCGCCUcuaUGCGCAg -5'
24677 5' -55.3 NC_005264.1 + 61928 0.7 0.786198
Target:  5'- gCCGCCGCUUgCGCGaAGAggaacugcuagagACGCGg- -3'
miRNA:   3'- -GGCGGCGAAaGCGCcUCUa------------UGCGCag -5'
24677 5' -55.3 NC_005264.1 + 144801 0.7 0.788915
Target:  5'- gCCGCCGC-UUCGCGucGGcacgcacUugGUGUCg -3'
miRNA:   3'- -GGCGGCGaAAGCGCcuCU-------AugCGCAG- -5'
24677 5' -55.3 NC_005264.1 + 18922 0.7 0.789819
Target:  5'- -aGCCGgccuaGCGGAGAgcUAUGCGUCa -3'
miRNA:   3'- ggCGGCgaaagCGCCUCU--AUGCGCAG- -5'
24677 5' -55.3 NC_005264.1 + 90975 0.7 0.797883
Target:  5'- cCCGCgUGCcgUCGCGGAacaccgccgccgcGA-ACGCGUCg -3'
miRNA:   3'- -GGCG-GCGaaAGCGCCU-------------CUaUGCGCAG- -5'
24677 5' -55.3 NC_005264.1 + 60991 0.7 0.798771
Target:  5'- cCUGCUGCUcg-GUGGAGuu-CGCGUCa -3'
miRNA:   3'- -GGCGGCGAaagCGCCUCuauGCGCAG- -5'
24677 5' -55.3 NC_005264.1 + 92094 0.7 0.798771
Target:  5'- uUGCCGCUUgcUCGCcu--GUACGCGUCu -3'
miRNA:   3'- gGCGGCGAA--AGCGccucUAUGCGCAG- -5'
24677 5' -55.3 NC_005264.1 + 79397 0.7 0.807577
Target:  5'- aCCGCCGCgggCGUGGcGAggcCGCGg- -3'
miRNA:   3'- -GGCGGCGaaaGCGCCuCUau-GCGCag -5'
24677 5' -55.3 NC_005264.1 + 92714 0.7 0.807577
Target:  5'- uUGCCGCa--CGCGGGaGUACGCGg- -3'
miRNA:   3'- gGCGGCGaaaGCGCCUcUAUGCGCag -5'
24677 5' -55.3 NC_005264.1 + 158041 0.69 0.816226
Target:  5'- gCGUgGCUUcugagUCgGUGGAGGUGCGCGa- -3'
miRNA:   3'- gGCGgCGAA-----AG-CGCCUCUAUGCGCag -5'
24677 5' -55.3 NC_005264.1 + 94425 0.69 0.824712
Target:  5'- gCGCgauCGCUgaCGUGG-GAUGCGCGUa -3'
miRNA:   3'- gGCG---GCGAaaGCGCCuCUAUGCGCAg -5'
24677 5' -55.3 NC_005264.1 + 16172 0.69 0.824712
Target:  5'- -gGCgGCUaagUUaCGCGGAGGUAgcuUGCGUCu -3'
miRNA:   3'- ggCGgCGA---AA-GCGCCUCUAU---GCGCAG- -5'
24677 5' -55.3 NC_005264.1 + 42802 0.69 0.833027
Target:  5'- cCCGCUagacccccugaGCUUgucuauugcucCGCGGAGAguguuCGCGUCg -3'
miRNA:   3'- -GGCGG-----------CGAAa----------GCGCCUCUau---GCGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.