miRNA display CGI


Results 41 - 60 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24677 5' -55.3 NC_005264.1 + 115236 0.69 0.841163
Target:  5'- gCGCCGU--UCGCGcGAGucucccccaACGCGUCc -3'
miRNA:   3'- gGCGGCGaaAGCGC-CUCua-------UGCGCAG- -5'
24677 5' -55.3 NC_005264.1 + 93492 0.69 0.841163
Target:  5'- gCGCUGCUg--GCGGccg-GCGCGUCg -3'
miRNA:   3'- gGCGGCGAaagCGCCucuaUGCGCAG- -5'
24677 5' -55.3 NC_005264.1 + 31468 0.69 0.849112
Target:  5'- gUCGCCGaugggCGUGGAuGGUGCGCccaGUCa -3'
miRNA:   3'- -GGCGGCgaaa-GCGCCU-CUAUGCG---CAG- -5'
24677 5' -55.3 NC_005264.1 + 49868 0.69 0.849112
Target:  5'- aCGCCGCgca-GCGu--AUACGCGUCa -3'
miRNA:   3'- gGCGGCGaaagCGCcucUAUGCGCAG- -5'
24677 5' -55.3 NC_005264.1 + 150495 0.69 0.849112
Target:  5'- gUCGCCGaugggCGUGGAuGGUGCGCccaGUCa -3'
miRNA:   3'- -GGCGGCgaaa-GCGCCU-CUAUGCG---CAG- -5'
24677 5' -55.3 NC_005264.1 + 40645 0.69 0.85687
Target:  5'- gCCGUCGCga-CGCGGAGGguCGcCGUUu -3'
miRNA:   3'- -GGCGGCGaaaGCGCCUCUauGC-GCAG- -5'
24677 5' -55.3 NC_005264.1 + 102873 0.69 0.85687
Target:  5'- aCCGCCGCgug-GCuGAGcgGCGCGg- -3'
miRNA:   3'- -GGCGGCGaaagCGcCUCuaUGCGCag -5'
24677 5' -55.3 NC_005264.1 + 38808 0.68 0.863681
Target:  5'- uCCGCgGCgaccccggCGCGGAcgagaacgacgacGAUGCGCGg- -3'
miRNA:   3'- -GGCGgCGaaa-----GCGCCU-------------CUAUGCGCag -5'
24677 5' -55.3 NC_005264.1 + 157834 0.68 0.863681
Target:  5'- uCCGCgGCgaccccggCGCGGAcgagaacgacgacGAUGCGCGg- -3'
miRNA:   3'- -GGCGgCGaaa-----GCGCCU-------------CUAUGCGCag -5'
24677 5' -55.3 NC_005264.1 + 83115 0.68 0.867394
Target:  5'- aCGCCGaCgggcgccaaggcCGCGGAG--GCGCGUCu -3'
miRNA:   3'- gGCGGC-Gaaa---------GCGCCUCuaUGCGCAG- -5'
24677 5' -55.3 NC_005264.1 + 139810 0.68 0.871781
Target:  5'- gCCGUCgGCcgUCGCGGGacGAaACGCGUa -3'
miRNA:   3'- -GGCGG-CGaaAGCGCCU--CUaUGCGCAg -5'
24677 5' -55.3 NC_005264.1 + 53839 0.68 0.871781
Target:  5'- aUCGCUgaGCUcgUCGUucaaggcuaGGAGAgACGCGUCg -3'
miRNA:   3'- -GGCGG--CGAa-AGCG---------CCUCUaUGCGCAG- -5'
24677 5' -55.3 NC_005264.1 + 18390 0.68 0.878924
Target:  5'- cCCGCgCGauccUUCGUGGAGAUACGgacaGUUu -3'
miRNA:   3'- -GGCG-GCga--AAGCGCCUCUAUGCg---CAG- -5'
24677 5' -55.3 NC_005264.1 + 49329 0.68 0.885852
Target:  5'- cCCGCgGCUgUUCGCgcucggcccGGAGGaACGCGg- -3'
miRNA:   3'- -GGCGgCGA-AAGCG---------CCUCUaUGCGCag -5'
24677 5' -55.3 NC_005264.1 + 115946 0.68 0.885852
Target:  5'- aCGCgGCgcaggCuaGGAGGUACGCGg- -3'
miRNA:   3'- gGCGgCGaaa--GcgCCUCUAUGCGCag -5'
24677 5' -55.3 NC_005264.1 + 129559 0.68 0.885852
Target:  5'- gUCGCCGCguggUCGUGGcaccGAUcuuGCGCGcUCu -3'
miRNA:   3'- -GGCGGCGaa--AGCGCCu---CUA---UGCGC-AG- -5'
24677 5' -55.3 NC_005264.1 + 17696 0.68 0.885852
Target:  5'- -aGCCGCUg--GCGGAGGaaauCGaCGUCa -3'
miRNA:   3'- ggCGGCGAaagCGCCUCUau--GC-GCAG- -5'
24677 5' -55.3 NC_005264.1 + 24360 0.68 0.888562
Target:  5'- cCCGCCGCUcuggcaugaccggcUUCGCGGcucccccggcggcgAGGUAgauCGCGa- -3'
miRNA:   3'- -GGCGGCGA--------------AAGCGCC--------------UCUAU---GCGCag -5'
24677 5' -55.3 NC_005264.1 + 57363 0.68 0.889904
Target:  5'- aUCGCCGUcgUCGCuGGAGGggagucuuaccugACGCGg- -3'
miRNA:   3'- -GGCGGCGaaAGCG-CCUCUa------------UGCGCag -5'
24677 5' -55.3 NC_005264.1 + 10539 0.68 0.89256
Target:  5'- gCGCCGCccucaggggCGCGGAuc-GCGCGUUc -3'
miRNA:   3'- gGCGGCGaaa------GCGCCUcuaUGCGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.