miRNA display CGI


Results 21 - 40 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24677 5' -55.3 NC_005264.1 + 31840 0.66 0.942612
Target:  5'- gUGCCGCg--CGCGGcaAGAcauggGCGCGa- -3'
miRNA:   3'- gGCGGCGaaaGCGCC--UCUa----UGCGCag -5'
24677 5' -55.3 NC_005264.1 + 34259 0.66 0.942612
Target:  5'- uCUGuaGCgaggCGCGG-GcgACGCGUCg -3'
miRNA:   3'- -GGCggCGaaa-GCGCCuCuaUGCGCAG- -5'
24677 5' -55.3 NC_005264.1 + 88000 0.66 0.942612
Target:  5'- gCCGCCGCUacgagaugUCGCGuauGGGAaagcUACGCa-- -3'
miRNA:   3'- -GGCGGCGAa-------AGCGC---CUCU----AUGCGcag -5'
24677 5' -55.3 NC_005264.1 + 94594 0.66 0.942612
Target:  5'- gCCGcCCGCgg-CGCGGGcauggcuuggcGGUGCgGCGUg -3'
miRNA:   3'- -GGC-GGCGaaaGCGCCU-----------CUAUG-CGCAg -5'
24677 5' -55.3 NC_005264.1 + 132457 0.66 0.937982
Target:  5'- aCCGCCGC---CGCcGAGAcgcgACGCGg- -3'
miRNA:   3'- -GGCGGCGaaaGCGcCUCUa---UGCGCag -5'
24677 5' -55.3 NC_005264.1 + 13430 0.66 0.937982
Target:  5'- aCCGCCGC---CGCcGAGAcgcgACGCGg- -3'
miRNA:   3'- -GGCGGCGaaaGCGcCUCUa---UGCGCag -5'
24677 5' -55.3 NC_005264.1 + 122816 0.66 0.937982
Target:  5'- aCCGCCGCcgaucugCGUGGcGGUcCGCGa- -3'
miRNA:   3'- -GGCGGCGaaa----GCGCCuCUAuGCGCag -5'
24677 5' -55.3 NC_005264.1 + 62983 0.66 0.937982
Target:  5'- aCCGCgGCUUUgGCGGAcuccaAgGCGUg -3'
miRNA:   3'- -GGCGgCGAAAgCGCCUcua--UgCGCAg -5'
24677 5' -55.3 NC_005264.1 + 120200 0.66 0.937982
Target:  5'- gCCGgCGCg--CGaUGGGGGUACGCa-- -3'
miRNA:   3'- -GGCgGCGaaaGC-GCCUCUAUGCGcag -5'
24677 5' -55.3 NC_005264.1 + 3790 0.66 0.937982
Target:  5'- aCCGCCGCcgaucugCGUGGcGGUcCGCGa- -3'
miRNA:   3'- -GGCGGCGaaa----GCGCCuCUAuGCGCag -5'
24677 5' -55.3 NC_005264.1 + 127358 0.66 0.937982
Target:  5'- gCCGUCGCgaucggcCGCGGcacucuCGCGUCa -3'
miRNA:   3'- -GGCGGCGaaa----GCGCCucuau-GCGCAG- -5'
24677 5' -55.3 NC_005264.1 + 1173 0.66 0.937982
Target:  5'- gCCGgCGCg--CGaUGGGGGUACGCa-- -3'
miRNA:   3'- -GGCgGCGaaaGC-GCCUCUAUGCGcag -5'
24677 5' -55.3 NC_005264.1 + 155944 0.66 0.937982
Target:  5'- -aGCCGCg--CGCuGGGAcUGCGCGg- -3'
miRNA:   3'- ggCGGCGaaaGCGcCUCU-AUGCGCag -5'
24677 5' -55.3 NC_005264.1 + 51248 0.66 0.93312
Target:  5'- gCGCCGCgguucaggaaUCGCGGAacaucugucGCGCGUUa -3'
miRNA:   3'- gGCGGCGaa--------AGCGCCUcua------UGCGCAG- -5'
24677 5' -55.3 NC_005264.1 + 64531 0.66 0.93312
Target:  5'- gCGCCGC---CGCGGAGGgggguucCGCGa- -3'
miRNA:   3'- gGCGGCGaaaGCGCCUCUau-----GCGCag -5'
24677 5' -55.3 NC_005264.1 + 151895 0.66 0.93312
Target:  5'- aUCGUCGgUccCGCGGuGGUugGCuGUCg -3'
miRNA:   3'- -GGCGGCgAaaGCGCCuCUAugCG-CAG- -5'
24677 5' -55.3 NC_005264.1 + 19106 0.66 0.93312
Target:  5'- aCCGCgGCgg-CGCGGAGAcgaGCa-- -3'
miRNA:   3'- -GGCGgCGaaaGCGCCUCUaugCGcag -5'
24677 5' -55.3 NC_005264.1 + 33612 0.66 0.93312
Target:  5'- gCCGCCGCUaaagUUCGgccAGAUugGCGg- -3'
miRNA:   3'- -GGCGGCGA----AAGCgccUCUAugCGCag -5'
24677 5' -55.3 NC_005264.1 + 32869 0.66 0.93312
Target:  5'- aUCGUCGgUccCGCGGuGGUugGCuGUCg -3'
miRNA:   3'- -GGCGGCgAaaGCGCCuCUAugCG-CAG- -5'
24677 5' -55.3 NC_005264.1 + 150727 0.66 0.932621
Target:  5'- cCCGCCaaaggucGCg--CGCGGGGcGUAcuuguuCGCGUCg -3'
miRNA:   3'- -GGCGG-------CGaaaGCGCCUC-UAU------GCGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.