miRNA display CGI


Results 41 - 60 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24677 5' -55.3 NC_005264.1 + 31701 0.66 0.932621
Target:  5'- cCCGCCaaaggucGCg--CGCGGGGcGUAcuuguuCGCGUCg -3'
miRNA:   3'- -GGCGG-------CGaaaGCGCCUC-UAU------GCGCAG- -5'
24677 5' -55.3 NC_005264.1 + 90027 0.67 0.93009
Target:  5'- gUCGCgCGCUUgauGgGGAGAUugcucaaggacaugaGCGCGUUg -3'
miRNA:   3'- -GGCG-GCGAAag-CgCCUCUA---------------UGCGCAG- -5'
24677 5' -55.3 NC_005264.1 + 123628 0.67 0.928024
Target:  5'- cCCGCCaGCgc-CGCGGcGGcguagGCGCGUUc -3'
miRNA:   3'- -GGCGG-CGaaaGCGCCuCUa----UGCGCAG- -5'
24677 5' -55.3 NC_005264.1 + 4601 0.67 0.928024
Target:  5'- cCCGCCaGCgc-CGCGGcGGcguagGCGCGUUc -3'
miRNA:   3'- -GGCGG-CGaaaGCGCCuCUa----UGCGCAG- -5'
24677 5' -55.3 NC_005264.1 + 66689 0.67 0.928024
Target:  5'- aCCGgCGCcgg-GCGGGGGgcguacUACGUGUCg -3'
miRNA:   3'- -GGCgGCGaaagCGCCUCU------AUGCGCAG- -5'
24677 5' -55.3 NC_005264.1 + 65611 0.67 0.928024
Target:  5'- gCUGCUGCgUUCGCGGcucguGGGUacccGCGCG-Cg -3'
miRNA:   3'- -GGCGGCGaAAGCGCC-----UCUA----UGCGCaG- -5'
24677 5' -55.3 NC_005264.1 + 40284 0.67 0.928024
Target:  5'- gCCGCCGCg-UCGCGGuucGAcgAgGCGg- -3'
miRNA:   3'- -GGCGGCGaaAGCGCCu--CUa-UgCGCag -5'
24677 5' -55.3 NC_005264.1 + 159311 0.67 0.928024
Target:  5'- gCCGCCGCg-UCGCGGuucGAcgAgGCGg- -3'
miRNA:   3'- -GGCGGCGaaAGCGCCu--CUa-UgCGCag -5'
24677 5' -55.3 NC_005264.1 + 19069 0.67 0.92592
Target:  5'- cCCGCCGCggggcaagaugUGCGGuguGAUuacgggaGCGUCg -3'
miRNA:   3'- -GGCGGCGaaa--------GCGCCu--CUAug-----CGCAG- -5'
24677 5' -55.3 NC_005264.1 + 32693 0.67 0.922693
Target:  5'- gCgGCCagGCUUUUaGCGGGGGUGagGUGUCa -3'
miRNA:   3'- -GgCGG--CGAAAG-CGCCUCUAUg-CGCAG- -5'
24677 5' -55.3 NC_005264.1 + 20265 0.67 0.922693
Target:  5'- gCGCgGCc-UCGCGGAGGggAC-CGUCu -3'
miRNA:   3'- gGCGgCGaaAGCGCCUCUa-UGcGCAG- -5'
24677 5' -55.3 NC_005264.1 + 60956 0.67 0.922693
Target:  5'- uCCGCCGUgUUCGUGu-GGUugGUGgUCg -3'
miRNA:   3'- -GGCGGCGaAAGCGCcuCUAugCGC-AG- -5'
24677 5' -55.3 NC_005264.1 + 120787 0.67 0.922693
Target:  5'- gCGCCGCgggcaaCGCGauuGGAUaggccgcguGCGCGUCg -3'
miRNA:   3'- gGCGGCGaaa---GCGCc--UCUA---------UGCGCAG- -5'
24677 5' -55.3 NC_005264.1 + 30082 0.67 0.920496
Target:  5'- gCCGCCGCgcccggacagaaUCGCGagucGAGAUGCGgG-Cg -3'
miRNA:   3'- -GGCGGCGaa----------AGCGC----CUCUAUGCgCaG- -5'
24677 5' -55.3 NC_005264.1 + 3609 0.67 0.917129
Target:  5'- aCCGCCGCggggggcCGCGaGGGcggGCGCGc- -3'
miRNA:   3'- -GGCGGCGaaa----GCGC-CUCua-UGCGCag -5'
24677 5' -55.3 NC_005264.1 + 78000 0.67 0.917129
Target:  5'- -gGCCGCgaUCGCGGGcGAU-CaCGUCg -3'
miRNA:   3'- ggCGGCGaaAGCGCCU-CUAuGcGCAG- -5'
24677 5' -55.3 NC_005264.1 + 122636 0.67 0.917129
Target:  5'- aCCGCCGCggggggcCGCGaGGGcggGCGCGc- -3'
miRNA:   3'- -GGCGGCGaaa----GCGC-CUCua-UGCGCag -5'
24677 5' -55.3 NC_005264.1 + 20631 0.67 0.911332
Target:  5'- aCCGCUGCc-UCGCG-AGAUuacacggaacCGCGUCg -3'
miRNA:   3'- -GGCGGCGaaAGCGCcUCUAu---------GCGCAG- -5'
24677 5' -55.3 NC_005264.1 + 111857 0.67 0.911332
Target:  5'- aCCGCUGCcggguaGCGGA---GCGUGUCu -3'
miRNA:   3'- -GGCGGCGaaag--CGCCUcuaUGCGCAG- -5'
24677 5' -55.3 NC_005264.1 + 96478 0.67 0.911332
Target:  5'- uCCGUCGCgUUCGUGauaGAGGcgaGCGUCg -3'
miRNA:   3'- -GGCGGCGaAAGCGC---CUCUaugCGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.