miRNA display CGI


Results 61 - 80 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24677 5' -55.3 NC_005264.1 + 111857 0.67 0.911332
Target:  5'- aCCGCUGCcggguaGCGGA---GCGUGUCu -3'
miRNA:   3'- -GGCGGCGaaag--CGCCUcuaUGCGCAG- -5'
24677 5' -55.3 NC_005264.1 + 47643 0.67 0.908948
Target:  5'- gUGCgGCUUcgcggaugUCGCGGAGugagaaucgcagACGCGUUg -3'
miRNA:   3'- gGCGgCGAA--------AGCGCCUCua----------UGCGCAG- -5'
24677 5' -55.3 NC_005264.1 + 151850 0.67 0.905303
Target:  5'- gCCGCCGCUccgGCGGcGAcACGUGg- -3'
miRNA:   3'- -GGCGGCGAaagCGCCuCUaUGCGCag -5'
24677 5' -55.3 NC_005264.1 + 94612 0.67 0.905303
Target:  5'- cCCGCCGCcggCGCGGA--UACGUc-- -3'
miRNA:   3'- -GGCGGCGaaaGCGCCUcuAUGCGcag -5'
24677 5' -55.3 NC_005264.1 + 29074 0.67 0.905303
Target:  5'- uCUGCCGCUcUUCGuCGGcGGUGCGaaugacgaacaCGUCc -3'
miRNA:   3'- -GGCGGCGA-AAGC-GCCuCUAUGC-----------GCAG- -5'
24677 5' -55.3 NC_005264.1 + 8360 0.67 0.902827
Target:  5'- aCCGUCGCUgaugcuuaccggCGcCGGAcGcgGCGCGUUg -3'
miRNA:   3'- -GGCGGCGAaa----------GC-GCCU-CuaUGCGCAG- -5'
24677 5' -55.3 NC_005264.1 + 127387 0.67 0.902827
Target:  5'- aCCGUCGCUgaugcuuaccggCGcCGGAcGcgGCGCGUUg -3'
miRNA:   3'- -GGCGGCGAaa----------GC-GCCU-CuaUGCGCAG- -5'
24677 5' -55.3 NC_005264.1 + 158571 0.67 0.899045
Target:  5'- gCCGCCGCcc-CGCGGuucccGCGCGg- -3'
miRNA:   3'- -GGCGGCGaaaGCGCCucua-UGCGCag -5'
24677 5' -55.3 NC_005264.1 + 146510 0.67 0.899045
Target:  5'- -gGCCGCgcggUUC-CaGAGcUACGCGUCg -3'
miRNA:   3'- ggCGGCGa---AAGcGcCUCuAUGCGCAG- -5'
24677 5' -55.3 NC_005264.1 + 39544 0.67 0.899045
Target:  5'- gCCGCCGCcc-CGCGGuucccGCGCGg- -3'
miRNA:   3'- -GGCGGCGaaaGCGCCucua-UGCGCag -5'
24677 5' -55.3 NC_005264.1 + 126376 0.67 0.898407
Target:  5'- gCCGCUGCUccuuggaUUCGCcgaGGAGAgGCaaGUCg -3'
miRNA:   3'- -GGCGGCGA-------AAGCG---CCUCUaUGcgCAG- -5'
24677 5' -55.3 NC_005264.1 + 145737 0.68 0.89256
Target:  5'- gCUGCUGCUgcgggguuugUUUGCGGcGGUGCGCa-- -3'
miRNA:   3'- -GGCGGCGA----------AAGCGCCuCUAUGCGcag -5'
24677 5' -55.3 NC_005264.1 + 10539 0.68 0.89256
Target:  5'- gCGCCGCccucaggggCGCGGAuc-GCGCGUUc -3'
miRNA:   3'- gGCGGCGaaa------GCGCCUcuaUGCGCAG- -5'
24677 5' -55.3 NC_005264.1 + 96658 0.68 0.89256
Target:  5'- cCCGCCGa---UGCGGGcGGUGCGC-UCa -3'
miRNA:   3'- -GGCGGCgaaaGCGCCU-CUAUGCGcAG- -5'
24677 5' -55.3 NC_005264.1 + 129566 0.68 0.89256
Target:  5'- gCGCCGCccucaggggCGCGGAuc-GCGCGUUc -3'
miRNA:   3'- gGCGGCGaaa------GCGCCUcuaUGCGCAG- -5'
24677 5' -55.3 NC_005264.1 + 57363 0.68 0.889904
Target:  5'- aUCGCCGUcgUCGCuGGAGGggagucuuaccugACGCGg- -3'
miRNA:   3'- -GGCGGCGaaAGCG-CCUCUa------------UGCGCag -5'
24677 5' -55.3 NC_005264.1 + 24360 0.68 0.888562
Target:  5'- cCCGCCGCUcuggcaugaccggcUUCGCGGcucccccggcggcgAGGUAgauCGCGa- -3'
miRNA:   3'- -GGCGGCGA--------------AAGCGCC--------------UCUAU---GCGCag -5'
24677 5' -55.3 NC_005264.1 + 49329 0.68 0.885852
Target:  5'- cCCGCgGCUgUUCGCgcucggcccGGAGGaACGCGg- -3'
miRNA:   3'- -GGCGgCGA-AAGCG---------CCUCUaUGCGCag -5'
24677 5' -55.3 NC_005264.1 + 17696 0.68 0.885852
Target:  5'- -aGCCGCUg--GCGGAGGaaauCGaCGUCa -3'
miRNA:   3'- ggCGGCGAaagCGCCUCUau--GC-GCAG- -5'
24677 5' -55.3 NC_005264.1 + 129559 0.68 0.885852
Target:  5'- gUCGCCGCguggUCGUGGcaccGAUcuuGCGCGcUCu -3'
miRNA:   3'- -GGCGGCGaa--AGCGCCu---CUA---UGCGC-AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.