miRNA display CGI


Results 1 - 20 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24677 5' -55.3 NC_005264.1 + 1173 0.66 0.937982
Target:  5'- gCCGgCGCg--CGaUGGGGGUACGCa-- -3'
miRNA:   3'- -GGCgGCGaaaGC-GCCUCUAUGCGcag -5'
24677 5' -55.3 NC_005264.1 + 3609 0.67 0.917129
Target:  5'- aCCGCCGCggggggcCGCGaGGGcggGCGCGc- -3'
miRNA:   3'- -GGCGGCGaaa----GCGC-CUCua-UGCGCag -5'
24677 5' -55.3 NC_005264.1 + 3790 0.66 0.937982
Target:  5'- aCCGCCGCcgaucugCGUGGcGGUcCGCGa- -3'
miRNA:   3'- -GGCGGCGaaa----GCGCCuCUAuGCGCag -5'
24677 5' -55.3 NC_005264.1 + 4169 0.66 0.951183
Target:  5'- aCGCCGCgg-UGUGGGGAaGCGgaggGUCc -3'
miRNA:   3'- gGCGGCGaaaGCGCCUCUaUGCg---CAG- -5'
24677 5' -55.3 NC_005264.1 + 4601 0.67 0.928024
Target:  5'- cCCGCCaGCgc-CGCGGcGGcguagGCGCGUUc -3'
miRNA:   3'- -GGCGG-CGaaaGCGCCuCUa----UGCGCAG- -5'
24677 5' -55.3 NC_005264.1 + 7372 0.66 0.945716
Target:  5'- gCCGCCGCggUuuucauuucuucgaUCGCGGccccgGCGcCGUCg -3'
miRNA:   3'- -GGCGGCGa-A--------------AGCGCCucua-UGC-GCAG- -5'
24677 5' -55.3 NC_005264.1 + 7590 0.67 0.911332
Target:  5'- gCGCCGCU---GCGGAGAUGCu---- -3'
miRNA:   3'- gGCGGCGAaagCGCCUCUAUGcgcag -5'
24677 5' -55.3 NC_005264.1 + 7618 0.66 0.946582
Target:  5'- cCCGCCGCagcaUCGCacugagucuuguaGaaauacacGGGAUACGUGUCg -3'
miRNA:   3'- -GGCGGCGaa--AGCG-------------C--------CUCUAUGCGCAG- -5'
24677 5' -55.3 NC_005264.1 + 8360 0.67 0.902827
Target:  5'- aCCGUCGCUgaugcuuaccggCGcCGGAcGcgGCGCGUUg -3'
miRNA:   3'- -GGCGGCGAaa----------GC-GCCU-CuaUGCGCAG- -5'
24677 5' -55.3 NC_005264.1 + 8895 0.66 0.951183
Target:  5'- aCGUacaaCGUg-UCGCuGGAGAcGCGCGUCu -3'
miRNA:   3'- gGCG----GCGaaAGCG-CCUCUaUGCGCAG- -5'
24677 5' -55.3 NC_005264.1 + 9832 0.71 0.723745
Target:  5'- gCCGCCGCacgUUCGCGaGAGGgucaaGCGg- -3'
miRNA:   3'- -GGCGGCGa--AAGCGC-CUCUaug--CGCag -5'
24677 5' -55.3 NC_005264.1 + 10539 0.68 0.89256
Target:  5'- gCGCCGCccucaggggCGCGGAuc-GCGCGUUc -3'
miRNA:   3'- gGCGGCGaaa------GCGCCUcuaUGCGCAG- -5'
24677 5' -55.3 NC_005264.1 + 11982 0.75 0.523761
Target:  5'- uUGCCGCg--CGCGGcacggcAGAgUACGCGUCa -3'
miRNA:   3'- gGCGGCGaaaGCGCC------UCU-AUGCGCAG- -5'
24677 5' -55.3 NC_005264.1 + 13430 0.66 0.937982
Target:  5'- aCCGCCGC---CGCcGAGAcgcgACGCGg- -3'
miRNA:   3'- -GGCGGCGaaaGCGcCUCUa---UGCGCag -5'
24677 5' -55.3 NC_005264.1 + 15356 0.66 0.942612
Target:  5'- uCCGCCGaacuugcccgUUCG-GGAGcgACGCGa- -3'
miRNA:   3'- -GGCGGCga--------AAGCgCCUCuaUGCGCag -5'
24677 5' -55.3 NC_005264.1 + 16170 0.71 0.713926
Target:  5'- aUGCCGCccugCGCGGAGGUcgguCGCGg- -3'
miRNA:   3'- gGCGGCGaaa-GCGCCUCUAu---GCGCag -5'
24677 5' -55.3 NC_005264.1 + 16172 0.69 0.824712
Target:  5'- -gGCgGCUaagUUaCGCGGAGGUAgcuUGCGUCu -3'
miRNA:   3'- ggCGgCGA---AA-GCGCCUCUAU---GCGCAG- -5'
24677 5' -55.3 NC_005264.1 + 17696 0.68 0.885852
Target:  5'- -aGCCGCUg--GCGGAGGaaauCGaCGUCa -3'
miRNA:   3'- ggCGGCGAaagCGCCUCUau--GC-GCAG- -5'
24677 5' -55.3 NC_005264.1 + 18390 0.68 0.878924
Target:  5'- cCCGCgCGauccUUCGUGGAGAUACGgacaGUUu -3'
miRNA:   3'- -GGCG-GCga--AAGCGCCUCUAUGCg---CAG- -5'
24677 5' -55.3 NC_005264.1 + 18922 0.7 0.789819
Target:  5'- -aGCCGgccuaGCGGAGAgcUAUGCGUCa -3'
miRNA:   3'- ggCGGCgaaagCGCCUCU--AUGCGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.