miRNA display CGI


Results 21 - 40 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24677 5' -55.3 NC_005264.1 + 19069 0.67 0.92592
Target:  5'- cCCGCCGCggggcaagaugUGCGGuguGAUuacgggaGCGUCg -3'
miRNA:   3'- -GGCGGCGaaa--------GCGCCu--CUAug-----CGCAG- -5'
24677 5' -55.3 NC_005264.1 + 19106 0.66 0.93312
Target:  5'- aCCGCgGCgg-CGCGGAGAcgaGCa-- -3'
miRNA:   3'- -GGCGgCGaaaGCGCCUCUaugCGcag -5'
24677 5' -55.3 NC_005264.1 + 20265 0.67 0.922693
Target:  5'- gCGCgGCc-UCGCGGAGGggAC-CGUCu -3'
miRNA:   3'- gGCGgCGaaAGCGCCUCUa-UGcGCAG- -5'
24677 5' -55.3 NC_005264.1 + 20631 0.67 0.911332
Target:  5'- aCCGCUGCc-UCGCG-AGAUuacacggaacCGCGUCg -3'
miRNA:   3'- -GGCGGCGaaAGCGCcUCUAu---------GCGCAG- -5'
24677 5' -55.3 NC_005264.1 + 24360 0.68 0.888562
Target:  5'- cCCGCCGCUcuggcaugaccggcUUCGCGGcucccccggcggcgAGGUAgauCGCGa- -3'
miRNA:   3'- -GGCGGCGA--------------AAGCGCC--------------UCUAU---GCGCag -5'
24677 5' -55.3 NC_005264.1 + 28395 0.66 0.955128
Target:  5'- aUGCCGauccugggCGUGGGuAUGCGUGUCg -3'
miRNA:   3'- gGCGGCgaaa----GCGCCUcUAUGCGCAG- -5'
24677 5' -55.3 NC_005264.1 + 29074 0.67 0.905303
Target:  5'- uCUGCCGCUcUUCGuCGGcGGUGCGaaugacgaacaCGUCc -3'
miRNA:   3'- -GGCGGCGA-AAGC-GCCuCUAUGC-----------GCAG- -5'
24677 5' -55.3 NC_005264.1 + 29918 0.66 0.947012
Target:  5'- cCCGUCGg---CGCuagGGAGGUACGCGc- -3'
miRNA:   3'- -GGCGGCgaaaGCG---CCUCUAUGCGCag -5'
24677 5' -55.3 NC_005264.1 + 30082 0.67 0.920496
Target:  5'- gCCGCCGCgcccggacagaaUCGCGagucGAGAUGCGgG-Cg -3'
miRNA:   3'- -GGCGGCGaa----------AGCGC----CUCUAUGCgCaG- -5'
24677 5' -55.3 NC_005264.1 + 31468 0.69 0.849112
Target:  5'- gUCGCCGaugggCGUGGAuGGUGCGCccaGUCa -3'
miRNA:   3'- -GGCGGCgaaa-GCGCCU-CUAUGCG---CAG- -5'
24677 5' -55.3 NC_005264.1 + 31701 0.66 0.932621
Target:  5'- cCCGCCaaaggucGCg--CGCGGGGcGUAcuuguuCGCGUCg -3'
miRNA:   3'- -GGCGG-------CGaaaGCGCCUC-UAU------GCGCAG- -5'
24677 5' -55.3 NC_005264.1 + 31840 0.66 0.942612
Target:  5'- gUGCCGCg--CGCGGcaAGAcauggGCGCGa- -3'
miRNA:   3'- gGCGGCGaaaGCGCC--UCUa----UGCGCag -5'
24677 5' -55.3 NC_005264.1 + 32693 0.67 0.922693
Target:  5'- gCgGCCagGCUUUUaGCGGGGGUGagGUGUCa -3'
miRNA:   3'- -GgCGG--CGAAAG-CGCCUCUAUg-CGCAG- -5'
24677 5' -55.3 NC_005264.1 + 32869 0.66 0.93312
Target:  5'- aUCGUCGgUccCGCGGuGGUugGCuGUCg -3'
miRNA:   3'- -GGCGGCgAaaGCGCCuCUAugCG-CAG- -5'
24677 5' -55.3 NC_005264.1 + 33612 0.66 0.93312
Target:  5'- gCCGCCGCUaaagUUCGgccAGAUugGCGg- -3'
miRNA:   3'- -GGCGGCGA----AAGCgccUCUAugCGCag -5'
24677 5' -55.3 NC_005264.1 + 34259 0.66 0.942612
Target:  5'- uCUGuaGCgaggCGCGG-GcgACGCGUCg -3'
miRNA:   3'- -GGCggCGaaa-GCGCCuCuaUGCGCAG- -5'
24677 5' -55.3 NC_005264.1 + 35005 0.71 0.733487
Target:  5'- aCCGCCgGCcgcCGCGGAGGcaACGCuGUCg -3'
miRNA:   3'- -GGCGG-CGaaaGCGCCUCUa-UGCG-CAG- -5'
24677 5' -55.3 NC_005264.1 + 37597 0.71 0.743143
Target:  5'- gCgGCCGCg---GCGGGGGgucaaaggACGCGUCu -3'
miRNA:   3'- -GgCGGCGaaagCGCCUCUa-------UGCGCAG- -5'
24677 5' -55.3 NC_005264.1 + 38174 0.74 0.593214
Target:  5'- aCCGCCGCgc-UGUGGGGAcACcuaGCGUCg -3'
miRNA:   3'- -GGCGGCGaaaGCGCCUCUaUG---CGCAG- -5'
24677 5' -55.3 NC_005264.1 + 38808 0.68 0.863681
Target:  5'- uCCGCgGCgaccccggCGCGGAcgagaacgacgacGAUGCGCGg- -3'
miRNA:   3'- -GGCGgCGaaa-----GCGCCU-------------CUAUGCGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.