miRNA display CGI


Results 41 - 60 of 134 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24677 5' -55.3 NC_005264.1 + 39217 0.7 0.771504
Target:  5'- gCCGCCGCggcgcUgGCGGGGAgggccUGCGUUc -3'
miRNA:   3'- -GGCGGCGaa---AgCGCCUCUau---GCGCAG- -5'
24677 5' -55.3 NC_005264.1 + 39544 0.67 0.899045
Target:  5'- gCCGCCGCcc-CGCGGuucccGCGCGg- -3'
miRNA:   3'- -GGCGGCGaaaGCGCCucua-UGCGCag -5'
24677 5' -55.3 NC_005264.1 + 40284 0.67 0.928024
Target:  5'- gCCGCCGCg-UCGCGGuucGAcgAgGCGg- -3'
miRNA:   3'- -GGCGGCGaaAGCGCCu--CUa-UgCGCag -5'
24677 5' -55.3 NC_005264.1 + 40645 0.69 0.85687
Target:  5'- gCCGUCGCga-CGCGGAGGguCGcCGUUu -3'
miRNA:   3'- -GGCGGCGaaaGCGCCUCUauGC-GCAG- -5'
24677 5' -55.3 NC_005264.1 + 40744 0.73 0.613402
Target:  5'- gCCGCCGCcagUCGCGGcGAgACaGCGUg -3'
miRNA:   3'- -GGCGGCGaa-AGCGCCuCUaUG-CGCAg -5'
24677 5' -55.3 NC_005264.1 + 42802 0.69 0.833027
Target:  5'- cCCGCUagacccccugaGCUUgucuauugcucCGCGGAGAguguuCGCGUCg -3'
miRNA:   3'- -GGCGG-----------CGAAa----------GCGCCUCUau---GCGCAG- -5'
24677 5' -55.3 NC_005264.1 + 45809 0.66 0.947012
Target:  5'- gCCGCCGCgcugaUCGCGcu-GUACuCGUCa -3'
miRNA:   3'- -GGCGGCGaa---AGCGCcucUAUGcGCAG- -5'
24677 5' -55.3 NC_005264.1 + 46909 0.66 0.954743
Target:  5'- gCGCCGCgugUUCGCGGcucucaaGGAcugcUACGgGg- -3'
miRNA:   3'- gGCGGCGa--AAGCGCC-------UCU----AUGCgCag -5'
24677 5' -55.3 NC_005264.1 + 47643 0.67 0.908948
Target:  5'- gUGCgGCUUcgcggaugUCGCGGAGugagaaucgcagACGCGUUg -3'
miRNA:   3'- gGCGgCGAA--------AGCGCCUCua----------UGCGCAG- -5'
24677 5' -55.3 NC_005264.1 + 49329 0.68 0.885852
Target:  5'- cCCGCgGCUgUUCGCgcucggcccGGAGGaACGCGg- -3'
miRNA:   3'- -GGCGgCGA-AAGCG---------CCUCUaUGCGCag -5'
24677 5' -55.3 NC_005264.1 + 49481 0.78 0.379716
Target:  5'- gCGCCGUaUUCGaCGGgcagcAGGUGCGCGUCu -3'
miRNA:   3'- gGCGGCGaAAGC-GCC-----UCUAUGCGCAG- -5'
24677 5' -55.3 NC_005264.1 + 49868 0.69 0.849112
Target:  5'- aCGCCGCgca-GCGu--AUACGCGUCa -3'
miRNA:   3'- gGCGGCGaaagCGCcucUAUGCGCAG- -5'
24677 5' -55.3 NC_005264.1 + 51248 0.66 0.93312
Target:  5'- gCGCCGCgguucaggaaUCGCGGAacaucugucGCGCGUUa -3'
miRNA:   3'- gGCGGCGaa--------AGCGCCUcua------UGCGCAG- -5'
24677 5' -55.3 NC_005264.1 + 53839 0.68 0.871781
Target:  5'- aUCGCUgaGCUcgUCGUucaaggcuaGGAGAgACGCGUCg -3'
miRNA:   3'- -GGCGG--CGAa-AGCG---------CCUCUaUGCGCAG- -5'
24677 5' -55.3 NC_005264.1 + 55231 0.74 0.563155
Target:  5'- aCGCCGCUgaaGCGGAaGA-ACGCGUa -3'
miRNA:   3'- gGCGGCGAaagCGCCU-CUaUGCGCAg -5'
24677 5' -55.3 NC_005264.1 + 57363 0.68 0.889904
Target:  5'- aUCGCCGUcgUCGCuGGAGGggagucuuaccugACGCGg- -3'
miRNA:   3'- -GGCGGCGaaAGCG-CCUCUa------------UGCGCag -5'
24677 5' -55.3 NC_005264.1 + 58994 0.72 0.678076
Target:  5'- aCCGCCcaaaguccuccaccaGaa-UCGCGGAGGcagGCGCGUCa -3'
miRNA:   3'- -GGCGG---------------CgaaAGCGCCUCUa--UGCGCAG- -5'
24677 5' -55.3 NC_005264.1 + 60956 0.67 0.922693
Target:  5'- uCCGCCGUgUUCGUGu-GGUugGUGgUCg -3'
miRNA:   3'- -GGCGGCGaAAGCGCcuCUAugCGC-AG- -5'
24677 5' -55.3 NC_005264.1 + 60991 0.7 0.798771
Target:  5'- cCUGCUGCUcg-GUGGAGuu-CGCGUCa -3'
miRNA:   3'- -GGCGGCGAaagCGCCUCuauGCGCAG- -5'
24677 5' -55.3 NC_005264.1 + 61928 0.7 0.786198
Target:  5'- gCCGCCGCUUgCGCGaAGAggaacugcuagagACGCGg- -3'
miRNA:   3'- -GGCGGCGAAaGCGCcUCUa------------UGCGCag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.