miRNA display CGI


Results 1 - 20 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24677 5' -55.3 NC_005264.1 + 159770 0.73 0.613402
Target:  5'- gCCGCCGCcagUCGCGGcGAgACaGCGUg -3'
miRNA:   3'- -GGCGGCGaa-AGCGCCuCUaUG-CGCAg -5'
24677 5' -55.3 NC_005264.1 + 159672 0.7 0.780727
Target:  5'- gCCGUCGCg--CGCGGAGGguCGcCGUUu -3'
miRNA:   3'- -GGCGGCGaaaGCGCCUCUauGC-GCAG- -5'
24677 5' -55.3 NC_005264.1 + 159311 0.67 0.928024
Target:  5'- gCCGCCGCg-UCGCGGuucGAcgAgGCGg- -3'
miRNA:   3'- -GGCGGCGaaAGCGCCu--CUa-UgCGCag -5'
24677 5' -55.3 NC_005264.1 + 158571 0.67 0.899045
Target:  5'- gCCGCCGCcc-CGCGGuucccGCGCGg- -3'
miRNA:   3'- -GGCGGCGaaaGCGCCucua-UGCGCag -5'
24677 5' -55.3 NC_005264.1 + 158244 0.7 0.771504
Target:  5'- gCCGCCGCggcgcUgGCGGGGAgggccUGCGUUc -3'
miRNA:   3'- -GGCGGCGaa---AgCGCCUCUau---GCGCAG- -5'
24677 5' -55.3 NC_005264.1 + 158041 0.69 0.816226
Target:  5'- gCGUgGCUUcugagUCgGUGGAGGUGCGCGa- -3'
miRNA:   3'- gGCGgCGAA-----AG-CGCCUCUAUGCGCag -5'
24677 5' -55.3 NC_005264.1 + 157834 0.68 0.863681
Target:  5'- uCCGCgGCgaccccggCGCGGAcgagaacgacgacGAUGCGCGg- -3'
miRNA:   3'- -GGCGgCGaaa-----GCGCCU-------------CUAUGCGCag -5'
24677 5' -55.3 NC_005264.1 + 157201 0.74 0.593214
Target:  5'- aCCGCCGCgc-UGUGGGGAcACcuaGCGUCg -3'
miRNA:   3'- -GGCGGCGaaaGCGCCUCUaUG---CGCAG- -5'
24677 5' -55.3 NC_005264.1 + 156624 0.71 0.743143
Target:  5'- gCgGCCGCg---GCGGGGGgucaaaggACGCGUCu -3'
miRNA:   3'- -GgCGGCGaaagCGCCUCUa-------UGCGCAG- -5'
24677 5' -55.3 NC_005264.1 + 155944 0.66 0.937982
Target:  5'- -aGCCGCg--CGCuGGGAcUGCGCGg- -3'
miRNA:   3'- ggCGGCGaaaGCGcCUCU-AUGCGCag -5'
24677 5' -55.3 NC_005264.1 + 154901 0.7 0.780727
Target:  5'- aCGCCGCggcCGUGGAcg-ACGCGUg -3'
miRNA:   3'- gGCGGCGaaaGCGCCUcuaUGCGCAg -5'
24677 5' -55.3 NC_005264.1 + 154234 0.74 0.583158
Target:  5'- aCCGgUGCgcgUUGCGGAGGaacacGCGCGUCu -3'
miRNA:   3'- -GGCgGCGaa-AGCGCCUCUa----UGCGCAG- -5'
24677 5' -55.3 NC_005264.1 + 153286 0.66 0.942612
Target:  5'- uCUGuaGCgaggCGCGG-GcgACGCGUCg -3'
miRNA:   3'- -GGCggCGaaa-GCGCCuCuaUGCGCAG- -5'
24677 5' -55.3 NC_005264.1 + 151895 0.66 0.93312
Target:  5'- aUCGUCGgUccCGCGGuGGUugGCuGUCg -3'
miRNA:   3'- -GGCGGCgAaaGCGCCuCUAugCG-CAG- -5'
24677 5' -55.3 NC_005264.1 + 151850 0.67 0.905303
Target:  5'- gCCGCCGCUccgGCGGcGAcACGUGg- -3'
miRNA:   3'- -GGCGGCGAaagCGCCuCUaUGCGCag -5'
24677 5' -55.3 NC_005264.1 + 150866 0.66 0.942612
Target:  5'- gUGCCGCg--CGCGGcaAGAcauggGCGCGa- -3'
miRNA:   3'- gGCGGCGaaaGCGCC--UCUa----UGCGCag -5'
24677 5' -55.3 NC_005264.1 + 150727 0.66 0.932621
Target:  5'- cCCGCCaaaggucGCg--CGCGGGGcGUAcuuguuCGCGUCg -3'
miRNA:   3'- -GGCGG-------CGaaaGCGCCUC-UAU------GCGCAG- -5'
24677 5' -55.3 NC_005264.1 + 150495 0.69 0.849112
Target:  5'- gUCGCCGaugggCGUGGAuGGUGCGCccaGUCa -3'
miRNA:   3'- -GGCGGCgaaa-GCGCCU-CUAUGCG---CAG- -5'
24677 5' -55.3 NC_005264.1 + 147376 0.72 0.704039
Target:  5'- aUCGCCGCUUUCGCGucGucGCGCuuGUCc -3'
miRNA:   3'- -GGCGGCGAAAGCGCcuCuaUGCG--CAG- -5'
24677 5' -55.3 NC_005264.1 + 146510 0.67 0.899045
Target:  5'- -gGCCGCgcggUUC-CaGAGcUACGCGUCg -3'
miRNA:   3'- ggCGGCGa---AAGcGcCUCuAUGCGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.