miRNA display CGI


Results 21 - 40 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24677 5' -55.3 NC_005264.1 + 145737 0.68 0.89256
Target:  5'- gCUGCUGCUgcgggguuugUUUGCGGcGGUGCGCa-- -3'
miRNA:   3'- -GGCGGCGA----------AAGCGCCuCUAUGCGcag -5'
24677 5' -55.3 NC_005264.1 + 144801 0.7 0.788915
Target:  5'- gCCGCCGC-UUCGCGucGGcacgcacUugGUGUCg -3'
miRNA:   3'- -GGCGGCGaAAGCGCcuCU-------AugCGCAG- -5'
24677 5' -55.3 NC_005264.1 + 139810 0.68 0.871781
Target:  5'- gCCGUCgGCcgUCGCGGGacGAaACGCGUa -3'
miRNA:   3'- -GGCGG-CGaaAGCGCCU--CUaUGCGCAg -5'
24677 5' -55.3 NC_005264.1 + 139537 0.71 0.743143
Target:  5'- cCCGCCGCacUCGUGGcGAUGuuUGCGcUCg -3'
miRNA:   3'- -GGCGGCGaaAGCGCCuCUAU--GCGC-AG- -5'
24677 5' -55.3 NC_005264.1 + 132457 0.66 0.937982
Target:  5'- aCCGCCGC---CGCcGAGAcgcgACGCGg- -3'
miRNA:   3'- -GGCGGCGaaaGCGcCUCUa---UGCGCag -5'
24677 5' -55.3 NC_005264.1 + 131265 0.73 0.623521
Target:  5'- cCCGCCGUaacugCGCGGGGuaACGCGcCa -3'
miRNA:   3'- -GGCGGCGaaa--GCGCCUCuaUGCGCaG- -5'
24677 5' -55.3 NC_005264.1 + 131009 0.75 0.523761
Target:  5'- uUGCCGCg--CGCGGcacggcAGAgUACGCGUCa -3'
miRNA:   3'- gGCGGCGaaaGCGCC------UCU-AUGCGCAG- -5'
24677 5' -55.3 NC_005264.1 + 129566 0.68 0.89256
Target:  5'- gCGCCGCccucaggggCGCGGAuc-GCGCGUUc -3'
miRNA:   3'- gGCGGCGaaa------GCGCCUcuaUGCGCAG- -5'
24677 5' -55.3 NC_005264.1 + 129559 0.68 0.885852
Target:  5'- gUCGCCGCguggUCGUGGcaccGAUcuuGCGCGcUCu -3'
miRNA:   3'- -GGCGGCGaa--AGCGCCu---CUA---UGCGC-AG- -5'
24677 5' -55.3 NC_005264.1 + 128858 0.71 0.723745
Target:  5'- gCCGCCGCacgUUCGCGaGAGGgucaaGCGg- -3'
miRNA:   3'- -GGCGGCGa--AAGCGC-CUCUaug--CGCag -5'
24677 5' -55.3 NC_005264.1 + 127387 0.67 0.902827
Target:  5'- aCCGUCGCUgaugcuuaccggCGcCGGAcGcgGCGCGUUg -3'
miRNA:   3'- -GGCGGCGAaa----------GC-GCCU-CuaUGCGCAG- -5'
24677 5' -55.3 NC_005264.1 + 127358 0.66 0.937982
Target:  5'- gCCGUCGCgaucggcCGCGGcacucuCGCGUCa -3'
miRNA:   3'- -GGCGGCGaaa----GCGCCucuau-GCGCAG- -5'
24677 5' -55.3 NC_005264.1 + 126376 0.67 0.898407
Target:  5'- gCCGCUGCUccuuggaUUCGCcgaGGAGAgGCaaGUCg -3'
miRNA:   3'- -GGCGGCGA-------AAGCG---CCUCUaUGcgCAG- -5'
24677 5' -55.3 NC_005264.1 + 123628 0.67 0.928024
Target:  5'- cCCGCCaGCgc-CGCGGcGGcguagGCGCGUUc -3'
miRNA:   3'- -GGCGG-CGaaaGCGCCuCUa----UGCGCAG- -5'
24677 5' -55.3 NC_005264.1 + 123196 0.66 0.951183
Target:  5'- aCGCCGCgg-UGUGGGGAaGCGgaggGUCc -3'
miRNA:   3'- gGCGGCGaaaGCGCCUCUaUGCg---CAG- -5'
24677 5' -55.3 NC_005264.1 + 122816 0.66 0.937982
Target:  5'- aCCGCCGCcgaucugCGUGGcGGUcCGCGa- -3'
miRNA:   3'- -GGCGGCGaaa----GCGCCuCUAuGCGCag -5'
24677 5' -55.3 NC_005264.1 + 122636 0.67 0.917129
Target:  5'- aCCGCCGCggggggcCGCGaGGGcggGCGCGc- -3'
miRNA:   3'- -GGCGGCGaaa----GCGC-CUCua-UGCGCag -5'
24677 5' -55.3 NC_005264.1 + 120787 0.67 0.922693
Target:  5'- gCGCCGCgggcaaCGCGauuGGAUaggccgcguGCGCGUCg -3'
miRNA:   3'- gGCGGCGaaa---GCGCc--UCUA---------UGCGCAG- -5'
24677 5' -55.3 NC_005264.1 + 120200 0.66 0.937982
Target:  5'- gCCGgCGCg--CGaUGGGGGUACGCa-- -3'
miRNA:   3'- -GGCgGCGaaaGC-GCCUCUAUGCGcag -5'
24677 5' -55.3 NC_005264.1 + 115946 0.68 0.885852
Target:  5'- aCGCgGCgcaggCuaGGAGGUACGCGg- -3'
miRNA:   3'- gGCGgCGaaa--GcgCCUCUAUGCGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.