miRNA display CGI


Results 1 - 20 of 134 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24677 5' -55.3 NC_005264.1 + 109613 1.1 0.003456
Target:  5'- uCCGCCGCUUUCGCGGAGAUACGCGUCc -3'
miRNA:   3'- -GGCGGCGAAAGCGCCUCUAUGCGCAG- -5'
24677 5' -55.3 NC_005264.1 + 42802 0.69 0.833027
Target:  5'- cCCGCUagacccccugaGCUUgucuauugcucCGCGGAGAguguuCGCGUCg -3'
miRNA:   3'- -GGCGG-----------CGAAa----------GCGCCUCUau---GCGCAG- -5'
24677 5' -55.3 NC_005264.1 + 115236 0.69 0.841163
Target:  5'- gCGCCGU--UCGCGcGAGucucccccaACGCGUCc -3'
miRNA:   3'- gGCGGCGaaAGCGC-CUCua-------UGCGCAG- -5'
24677 5' -55.3 NC_005264.1 + 103779 0.66 0.955128
Target:  5'- cCUGCuCGCcaacacaagaUCGCGGuucGGAUGCGCGg- -3'
miRNA:   3'- -GGCG-GCGaa--------AGCGCC---UCUAUGCGCag -5'
24677 5' -55.3 NC_005264.1 + 157201 0.74 0.593214
Target:  5'- aCCGCCGCgc-UGUGGGGAcACcuaGCGUCg -3'
miRNA:   3'- -GGCGGCGaaaGCGCCUCUaUG---CGCAG- -5'
24677 5' -55.3 NC_005264.1 + 159770 0.73 0.613402
Target:  5'- gCCGCCGCcagUCGCGGcGAgACaGCGUg -3'
miRNA:   3'- -GGCGGCGaa-AGCGCCuCUaUG-CGCAg -5'
24677 5' -55.3 NC_005264.1 + 35005 0.71 0.733487
Target:  5'- aCCGCCgGCcgcCGCGGAGGcaACGCuGUCg -3'
miRNA:   3'- -GGCGG-CGaaaGCGCCUCUa-UGCG-CAG- -5'
24677 5' -55.3 NC_005264.1 + 156624 0.71 0.743143
Target:  5'- gCgGCCGCg---GCGGGGGgucaaaggACGCGUCu -3'
miRNA:   3'- -GgCGGCGaaagCGCCUCUa-------UGCGCAG- -5'
24677 5' -55.3 NC_005264.1 + 71825 0.7 0.777053
Target:  5'- -aGCCGCc--CGCGGGGucgcgaauaacgACGCGUCg -3'
miRNA:   3'- ggCGGCGaaaGCGCCUCua----------UGCGCAG- -5'
24677 5' -55.3 NC_005264.1 + 94425 0.69 0.824712
Target:  5'- gCGCgauCGCUgaCGUGG-GAUGCGCGUa -3'
miRNA:   3'- gGCG---GCGAaaGCGCCuCUAUGCGCAg -5'
24677 5' -55.3 NC_005264.1 + 18922 0.7 0.789819
Target:  5'- -aGCCGgccuaGCGGAGAgcUAUGCGUCa -3'
miRNA:   3'- ggCGGCgaaagCGCCUCU--AUGCGCAG- -5'
24677 5' -55.3 NC_005264.1 + 158244 0.7 0.771504
Target:  5'- gCCGCCGCggcgcUgGCGGGGAgggccUGCGUUc -3'
miRNA:   3'- -GGCGGCGaa---AgCGCCUCUau---GCGCAG- -5'
24677 5' -55.3 NC_005264.1 + 49481 0.78 0.379716
Target:  5'- gCGCCGUaUUCGaCGGgcagcAGGUGCGCGUCu -3'
miRNA:   3'- gGCGGCGaAAGC-GCC-----UCUAUGCGCAG- -5'
24677 5' -55.3 NC_005264.1 + 92714 0.7 0.807577
Target:  5'- uUGCCGCa--CGCGGGaGUACGCGg- -3'
miRNA:   3'- gGCGGCGaaaGCGCCUcUAUGCGCag -5'
24677 5' -55.3 NC_005264.1 + 131009 0.75 0.523761
Target:  5'- uUGCCGCg--CGCGGcacggcAGAgUACGCGUCa -3'
miRNA:   3'- gGCGGCGaaaGCGCC------UCU-AUGCGCAG- -5'
24677 5' -55.3 NC_005264.1 + 139537 0.71 0.743143
Target:  5'- cCCGCCGCacUCGUGGcGAUGuuUGCGcUCg -3'
miRNA:   3'- -GGCGGCGaaAGCGCCuCUAU--GCGC-AG- -5'
24677 5' -55.3 NC_005264.1 + 16172 0.69 0.824712
Target:  5'- -gGCgGCUaagUUaCGCGGAGGUAgcuUGCGUCu -3'
miRNA:   3'- ggCGgCGA---AA-GCGCCUCUAU---GCGCAG- -5'
24677 5' -55.3 NC_005264.1 + 93492 0.69 0.841163
Target:  5'- gCGCUGCUg--GCGGccg-GCGCGUCg -3'
miRNA:   3'- gGCGGCGAaagCGCCucuaUGCGCAG- -5'
24677 5' -55.3 NC_005264.1 + 106353 0.74 0.573136
Target:  5'- aCUGCCGCUUggCGCGGuuAGAUuucucCGCGUUc -3'
miRNA:   3'- -GGCGGCGAAa-GCGCC--UCUAu----GCGCAG- -5'
24677 5' -55.3 NC_005264.1 + 128858 0.71 0.723745
Target:  5'- gCCGCCGCacgUUCGCGaGAGGgucaaGCGg- -3'
miRNA:   3'- -GGCGGCGa--AAGCGC-CUCUaug--CGCag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.