Results 21 - 40 of 134 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24677 | 5' | -55.3 | NC_005264.1 | + | 53839 | 0.68 | 0.871781 |
Target: 5'- aUCGCUgaGCUcgUCGUucaaggcuaGGAGAgACGCGUCg -3' miRNA: 3'- -GGCGG--CGAa-AGCG---------CCUCUaUGCGCAG- -5' |
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24677 | 5' | -55.3 | NC_005264.1 | + | 115236 | 0.69 | 0.841163 |
Target: 5'- gCGCCGU--UCGCGcGAGucucccccaACGCGUCc -3' miRNA: 3'- gGCGGCGaaAGCGC-CUCua-------UGCGCAG- -5' |
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24677 | 5' | -55.3 | NC_005264.1 | + | 158244 | 0.7 | 0.771504 |
Target: 5'- gCCGCCGCggcgcUgGCGGGGAgggccUGCGUUc -3' miRNA: 3'- -GGCGGCGaa---AgCGCCUCUau---GCGCAG- -5' |
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24677 | 5' | -55.3 | NC_005264.1 | + | 106353 | 0.74 | 0.573136 |
Target: 5'- aCUGCCGCUUggCGCGGuuAGAUuucucCGCGUUc -3' miRNA: 3'- -GGCGGCGAAa-GCGCC--UCUAu----GCGCAG- -5' |
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24677 | 5' | -55.3 | NC_005264.1 | + | 20631 | 0.67 | 0.911332 |
Target: 5'- aCCGCUGCc-UCGCG-AGAUuacacggaacCGCGUCg -3' miRNA: 3'- -GGCGGCGaaAGCGCcUCUAu---------GCGCAG- -5' |
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24677 | 5' | -55.3 | NC_005264.1 | + | 146510 | 0.67 | 0.899045 |
Target: 5'- -gGCCGCgcggUUC-CaGAGcUACGCGUCg -3' miRNA: 3'- ggCGGCGa---AAGcGcCUCuAUGCGCAG- -5' |
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24677 | 5' | -55.3 | NC_005264.1 | + | 42802 | 0.69 | 0.833027 |
Target: 5'- cCCGCUagacccccugaGCUUgucuauugcucCGCGGAGAguguuCGCGUCg -3' miRNA: 3'- -GGCGG-----------CGAAa----------GCGCCUCUau---GCGCAG- -5' |
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24677 | 5' | -55.3 | NC_005264.1 | + | 131009 | 0.75 | 0.523761 |
Target: 5'- uUGCCGCg--CGCGGcacggcAGAgUACGCGUCa -3' miRNA: 3'- gGCGGCGaaaGCGCC------UCU-AUGCGCAG- -5' |
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24677 | 5' | -55.3 | NC_005264.1 | + | 129566 | 0.68 | 0.89256 |
Target: 5'- gCGCCGCccucaggggCGCGGAuc-GCGCGUUc -3' miRNA: 3'- gGCGGCGaaa------GCGCCUcuaUGCGCAG- -5' |
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24677 | 5' | -55.3 | NC_005264.1 | + | 49481 | 0.78 | 0.379716 |
Target: 5'- gCGCCGUaUUCGaCGGgcagcAGGUGCGCGUCu -3' miRNA: 3'- gGCGGCGaAAGC-GCC-----UCUAUGCGCAG- -5' |
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24677 | 5' | -55.3 | NC_005264.1 | + | 93492 | 0.69 | 0.841163 |
Target: 5'- gCGCUGCUg--GCGGccg-GCGCGUCg -3' miRNA: 3'- gGCGGCGAaagCGCCucuaUGCGCAG- -5' |
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24677 | 5' | -55.3 | NC_005264.1 | + | 115946 | 0.68 | 0.885852 |
Target: 5'- aCGCgGCgcaggCuaGGAGGUACGCGg- -3' miRNA: 3'- gGCGgCGaaa--GcgCCUCUAUGCGCag -5' |
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24677 | 5' | -55.3 | NC_005264.1 | + | 92714 | 0.7 | 0.807577 |
Target: 5'- uUGCCGCa--CGCGGGaGUACGCGg- -3' miRNA: 3'- gGCGGCGaaaGCGCCUcUAUGCGCag -5' |
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24677 | 5' | -55.3 | NC_005264.1 | + | 71825 | 0.7 | 0.777053 |
Target: 5'- -aGCCGCc--CGCGGGGucgcgaauaacgACGCGUCg -3' miRNA: 3'- ggCGGCGaaaGCGCCUCua----------UGCGCAG- -5' |
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24677 | 5' | -55.3 | NC_005264.1 | + | 35005 | 0.71 | 0.733487 |
Target: 5'- aCCGCCgGCcgcCGCGGAGGcaACGCuGUCg -3' miRNA: 3'- -GGCGG-CGaaaGCGCCUCUa-UGCG-CAG- -5' |
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24677 | 5' | -55.3 | NC_005264.1 | + | 157201 | 0.74 | 0.593214 |
Target: 5'- aCCGCCGCgc-UGUGGGGAcACcuaGCGUCg -3' miRNA: 3'- -GGCGGCGaaaGCGCCUCUaUG---CGCAG- -5' |
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24677 | 5' | -55.3 | NC_005264.1 | + | 20265 | 0.67 | 0.922693 |
Target: 5'- gCGCgGCc-UCGCGGAGGggAC-CGUCu -3' miRNA: 3'- gGCGgCGaaAGCGCCUCUa-UGcGCAG- -5' |
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24677 | 5' | -55.3 | NC_005264.1 | + | 122636 | 0.67 | 0.917129 |
Target: 5'- aCCGCCGCggggggcCGCGaGGGcggGCGCGc- -3' miRNA: 3'- -GGCGGCGaaa----GCGC-CUCua-UGCGCag -5' |
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24677 | 5' | -55.3 | NC_005264.1 | + | 94612 | 0.67 | 0.905303 |
Target: 5'- cCCGCCGCcggCGCGGA--UACGUc-- -3' miRNA: 3'- -GGCGGCGaaaGCGCCUcuAUGCGcag -5' |
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24677 | 5' | -55.3 | NC_005264.1 | + | 158571 | 0.67 | 0.899045 |
Target: 5'- gCCGCCGCcc-CGCGGuucccGCGCGg- -3' miRNA: 3'- -GGCGGCGaaaGCGCCucua-UGCGCag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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