Results 41 - 60 of 134 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24677 | 5' | -55.3 | NC_005264.1 | + | 7590 | 0.67 | 0.911332 |
Target: 5'- gCGCCGCU---GCGGAGAUGCu---- -3' miRNA: 3'- gGCGGCGAaagCGCCUCUAUGcgcag -5' |
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24677 | 5' | -55.3 | NC_005264.1 | + | 42802 | 0.69 | 0.833027 |
Target: 5'- cCCGCUagacccccugaGCUUgucuauugcucCGCGGAGAguguuCGCGUCg -3' miRNA: 3'- -GGCGG-----------CGAAa----------GCGCCUCUau---GCGCAG- -5' |
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24677 | 5' | -55.3 | NC_005264.1 | + | 131009 | 0.75 | 0.523761 |
Target: 5'- uUGCCGCg--CGCGGcacggcAGAgUACGCGUCa -3' miRNA: 3'- gGCGGCGaaaGCGCC------UCU-AUGCGCAG- -5' |
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24677 | 5' | -55.3 | NC_005264.1 | + | 47643 | 0.67 | 0.908948 |
Target: 5'- gUGCgGCUUcgcggaugUCGCGGAGugagaaucgcagACGCGUUg -3' miRNA: 3'- gGCGgCGAA--------AGCGCCUCua----------UGCGCAG- -5' |
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24677 | 5' | -55.3 | NC_005264.1 | + | 49481 | 0.78 | 0.379716 |
Target: 5'- gCGCCGUaUUCGaCGGgcagcAGGUGCGCGUCu -3' miRNA: 3'- gGCGGCGaAAGC-GCC-----UCUAUGCGCAG- -5' |
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24677 | 5' | -55.3 | NC_005264.1 | + | 7372 | 0.66 | 0.945716 |
Target: 5'- gCCGCCGCggUuuucauuucuucgaUCGCGGccccgGCGcCGUCg -3' miRNA: 3'- -GGCGGCGa-A--------------AGCGCCucua-UGC-GCAG- -5' |
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24677 | 5' | -55.3 | NC_005264.1 | + | 157201 | 0.74 | 0.593214 |
Target: 5'- aCCGCCGCgc-UGUGGGGAcACcuaGCGUCg -3' miRNA: 3'- -GGCGGCGaaaGCGCCUCUaUG---CGCAG- -5' |
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24677 | 5' | -55.3 | NC_005264.1 | + | 150866 | 0.66 | 0.942612 |
Target: 5'- gUGCCGCg--CGCGGcaAGAcauggGCGCGa- -3' miRNA: 3'- gGCGGCGaaaGCGCC--UCUa----UGCGCag -5' |
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24677 | 5' | -55.3 | NC_005264.1 | + | 122816 | 0.66 | 0.937982 |
Target: 5'- aCCGCCGCcgaucugCGUGGcGGUcCGCGa- -3' miRNA: 3'- -GGCGGCGaaa----GCGCCuCUAuGCGCag -5' |
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24677 | 5' | -55.3 | NC_005264.1 | + | 51248 | 0.66 | 0.93312 |
Target: 5'- gCGCCGCgguucaggaaUCGCGGAacaucugucGCGCGUUa -3' miRNA: 3'- gGCGGCGaa--------AGCGCCUcua------UGCGCAG- -5' |
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24677 | 5' | -55.3 | NC_005264.1 | + | 150727 | 0.66 | 0.932621 |
Target: 5'- cCCGCCaaaggucGCg--CGCGGGGcGUAcuuguuCGCGUCg -3' miRNA: 3'- -GGCGG-------CGaaaGCGCCUC-UAU------GCGCAG- -5' |
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24677 | 5' | -55.3 | NC_005264.1 | + | 20265 | 0.67 | 0.922693 |
Target: 5'- gCGCgGCc-UCGCGGAGGggAC-CGUCu -3' miRNA: 3'- gGCGgCGaaAGCGCCUCUa-UGcGCAG- -5' |
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24677 | 5' | -55.3 | NC_005264.1 | + | 122636 | 0.67 | 0.917129 |
Target: 5'- aCCGCCGCggggggcCGCGaGGGcggGCGCGc- -3' miRNA: 3'- -GGCGGCGaaa----GCGC-CUCua-UGCGCag -5' |
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24677 | 5' | -55.3 | NC_005264.1 | + | 127387 | 0.67 | 0.902827 |
Target: 5'- aCCGUCGCUgaugcuuaccggCGcCGGAcGcgGCGCGUUg -3' miRNA: 3'- -GGCGGCGAaa----------GC-GCCU-CuaUGCGCAG- -5' |
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24677 | 5' | -55.3 | NC_005264.1 | + | 129566 | 0.68 | 0.89256 |
Target: 5'- gCGCCGCccucaggggCGCGGAuc-GCGCGUUc -3' miRNA: 3'- gGCGGCGaaa------GCGCCUcuaUGCGCAG- -5' |
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24677 | 5' | -55.3 | NC_005264.1 | + | 53839 | 0.68 | 0.871781 |
Target: 5'- aUCGCUgaGCUcgUCGUucaaggcuaGGAGAgACGCGUCg -3' miRNA: 3'- -GGCGG--CGAa-AGCG---------CCUCUaUGCGCAG- -5' |
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24677 | 5' | -55.3 | NC_005264.1 | + | 115236 | 0.69 | 0.841163 |
Target: 5'- gCGCCGU--UCGCGcGAGucucccccaACGCGUCc -3' miRNA: 3'- gGCGGCGaaAGCGC-CUCua-------UGCGCAG- -5' |
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24677 | 5' | -55.3 | NC_005264.1 | + | 92714 | 0.7 | 0.807577 |
Target: 5'- uUGCCGCa--CGCGGGaGUACGCGg- -3' miRNA: 3'- gGCGGCGaaaGCGCCUcUAUGCGCag -5' |
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24677 | 5' | -55.3 | NC_005264.1 | + | 71825 | 0.7 | 0.777053 |
Target: 5'- -aGCCGCc--CGCGGGGucgcgaauaacgACGCGUCg -3' miRNA: 3'- ggCGGCGaaaGCGCCUCua----------UGCGCAG- -5' |
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24677 | 5' | -55.3 | NC_005264.1 | + | 35005 | 0.71 | 0.733487 |
Target: 5'- aCCGCCgGCcgcCGCGGAGGcaACGCuGUCg -3' miRNA: 3'- -GGCGG-CGaaaGCGCCUCUa-UGCG-CAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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