miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24678 3' -59.7 NC_005264.1 + 51280 0.65 0.783084
Target:  5'- cGCGCGUuaccacgagcaggaAGGCAcccUCGUGCaCGUCgGCGu -3'
miRNA:   3'- -CGCGCA--------------UCCGUc--GGCACG-GUAGgCGU- -5'
24678 3' -59.7 NC_005264.1 + 3496 0.66 0.776754
Target:  5'- aCGCGgcgggGGGCAGgggauCCucGCCGUCCGCc -3'
miRNA:   3'- cGCGCa----UCCGUC-----GGcaCGGUAGGCGu -5'
24678 3' -59.7 NC_005264.1 + 34988 0.66 0.776754
Target:  5'- cGCGCGccGGGUucuagaccGCCG-GCCG-CCGCGg -3'
miRNA:   3'- -CGCGCa-UCCGu-------CGGCaCGGUaGGCGU- -5'
24678 3' -59.7 NC_005264.1 + 27947 0.66 0.776754
Target:  5'- uGCGCGUcGGUGGUCGUGUCGcuuugggaaaCGCGu -3'
miRNA:   3'- -CGCGCAuCCGUCGGCACGGUag--------GCGU- -5'
24678 3' -59.7 NC_005264.1 + 122523 0.66 0.776754
Target:  5'- aCGCGgcgggGGGCAGgggauCCucGCCGUCCGCc -3'
miRNA:   3'- cGCGCa----UCCGUC-----GGcaCGGUAGGCGu -5'
24678 3' -59.7 NC_005264.1 + 106524 0.66 0.767608
Target:  5'- cGCGaCGgcGGCAGCgCG-GCCGcggaguuuUUCGCGa -3'
miRNA:   3'- -CGC-GCauCCGUCG-GCaCGGU--------AGGCGU- -5'
24678 3' -59.7 NC_005264.1 + 138540 0.66 0.767608
Target:  5'- uGCGCGUagccacagAGGCcGCCGUGU---UCGCGa -3'
miRNA:   3'- -CGCGCA--------UCCGuCGGCACGguaGGCGU- -5'
24678 3' -59.7 NC_005264.1 + 134500 0.66 0.767608
Target:  5'- uCGCGcAGGCaAGUCGUGCCGauaCCGa- -3'
miRNA:   3'- cGCGCaUCCG-UCGGCACGGUa--GGCgu -5'
24678 3' -59.7 NC_005264.1 + 68256 0.66 0.767608
Target:  5'- cGCGcCGcGGGCGGCC-UGCUGcugCCGCc -3'
miRNA:   3'- -CGC-GCaUCCGUCGGcACGGUa--GGCGu -5'
24678 3' -59.7 NC_005264.1 + 126123 0.66 0.764841
Target:  5'- uGCGCGgcGGCugAGCCGaUGgCAcuugcgcggcagaaUCCGCc -3'
miRNA:   3'- -CGCGCauCCG--UCGGC-ACgGU--------------AGGCGu -5'
24678 3' -59.7 NC_005264.1 + 54211 0.66 0.763917
Target:  5'- uGCGCGggggauacggacGGCGGCCGgUGCguUCaCGCu -3'
miRNA:   3'- -CGCGCau----------CCGUCGGC-ACGguAG-GCGu -5'
24678 3' -59.7 NC_005264.1 + 86703 0.66 0.758347
Target:  5'- cGCGCGc-GGUcuuuGCC--GCCGUCCGCGu -3'
miRNA:   3'- -CGCGCauCCGu---CGGcaCGGUAGGCGU- -5'
24678 3' -59.7 NC_005264.1 + 46159 0.66 0.752739
Target:  5'- aCGCGUGuuuguccccuggaucGGCGGCCGccccGCCAUCUaCAa -3'
miRNA:   3'- cGCGCAU---------------CCGUCGGCa---CGGUAGGcGU- -5'
24678 3' -59.7 NC_005264.1 + 72205 0.66 0.752739
Target:  5'- cGCGCGcccuucgGGGUugugcguuuaugucgAGCCGUGgCA-CCGCGa -3'
miRNA:   3'- -CGCGCa------UCCG---------------UCGGCACgGUaGGCGU- -5'
24678 3' -59.7 NC_005264.1 + 42072 0.66 0.749921
Target:  5'- gGCGCGUGGcGuCAGCUGcGCCGggauaucccucgucgUCGCAg -3'
miRNA:   3'- -CGCGCAUC-C-GUCGGCaCGGUa--------------GGCGU- -5'
24678 3' -59.7 NC_005264.1 + 153016 0.66 0.74898
Target:  5'- cGCGaaCGUGcGGCGGCCcauGUaGCCggCCGCGu -3'
miRNA:   3'- -CGC--GCAU-CCGUCGG---CA-CGGuaGGCGU- -5'
24678 3' -59.7 NC_005264.1 + 33989 0.66 0.74898
Target:  5'- cGCGaaCGUGcGGCGGCCcauGUaGCCggCCGCGu -3'
miRNA:   3'- -CGC--GCAU-CCGUCGG---CA-CGGuaGGCGU- -5'
24678 3' -59.7 NC_005264.1 + 124852 0.66 0.74898
Target:  5'- -gGCGgcGGUGGCCGccacucGCCuggCCGCGg -3'
miRNA:   3'- cgCGCauCCGUCGGCa-----CGGua-GGCGU- -5'
24678 3' -59.7 NC_005264.1 + 56520 0.66 0.74898
Target:  5'- cUGUGgagGGGUcGCCcUGCCcgCCGCAg -3'
miRNA:   3'- cGCGCa--UCCGuCGGcACGGuaGGCGU- -5'
24678 3' -59.7 NC_005264.1 + 21067 0.66 0.74898
Target:  5'- aGCGCGUuGGCcaagccauauGCCGUGCUcgCCu-- -3'
miRNA:   3'- -CGCGCAuCCGu---------CGGCACGGuaGGcgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.