miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24678 3' -59.7 NC_005264.1 + 126282 0.66 0.74898
Target:  5'- cCGCGgAGGCGGCCaUGCCGcuUUCGg- -3'
miRNA:   3'- cGCGCaUCCGUCGGcACGGU--AGGCgu -5'
24678 3' -59.7 NC_005264.1 + 124852 0.66 0.74898
Target:  5'- -gGCGgcGGUGGCCGccacucGCCuggCCGCGg -3'
miRNA:   3'- cgCGCauCCGUCGGCa-----CGGua-GGCGU- -5'
24678 3' -59.7 NC_005264.1 + 36511 0.66 0.739515
Target:  5'- cGCGCGgccucgacgAGGCGGgCGcaggaGCCAUCgGCc -3'
miRNA:   3'- -CGCGCa--------UCCGUCgGCa----CGGUAGgCGu -5'
24678 3' -59.7 NC_005264.1 + 155774 0.66 0.739515
Target:  5'- aGCGCGacGGCgccGGCCGgcGCCGUcgCCGCu -3'
miRNA:   3'- -CGCGCauCCG---UCGGCa-CGGUA--GGCGu -5'
24678 3' -59.7 NC_005264.1 + 122571 0.66 0.739515
Target:  5'- aCGCGgcGGCguccAGCaucucuCGUGCCAcuuccUCCGCGu -3'
miRNA:   3'- cGCGCauCCG----UCG------GCACGGU-----AGGCGU- -5'
24678 3' -59.7 NC_005264.1 + 36748 0.66 0.739515
Target:  5'- aGCGCGacGGCgccGGCCGgcGCCGUcgCCGCu -3'
miRNA:   3'- -CGCGCauCCG---UCGGCa-CGGUA--GGCGu -5'
24678 3' -59.7 NC_005264.1 + 3544 0.66 0.739515
Target:  5'- aCGCGgcGGCguccAGCaucucuCGUGCCAcuuccUCCGCGu -3'
miRNA:   3'- cGCGCauCCG----UCG------GCACGGU-----AGGCGU- -5'
24678 3' -59.7 NC_005264.1 + 107219 0.67 0.729961
Target:  5'- cGCGCGguuGGCAuUCGgcGCCAgCCGCGg -3'
miRNA:   3'- -CGCGCau-CCGUcGGCa-CGGUaGGCGU- -5'
24678 3' -59.7 NC_005264.1 + 126707 0.67 0.729961
Target:  5'- aGCGCuacGUGGGCaaagaaaucgucGGCCGgcgaguaccaucUGCCAgCCGCGc -3'
miRNA:   3'- -CGCG---CAUCCG------------UCGGC------------ACGGUaGGCGU- -5'
24678 3' -59.7 NC_005264.1 + 93862 0.67 0.720326
Target:  5'- aUGCGgcGGGUAGUCGUGCCGUg-GCAg -3'
miRNA:   3'- cGCGCa-UCCGUCGGCACGGUAggCGU- -5'
24678 3' -59.7 NC_005264.1 + 51781 0.67 0.720326
Target:  5'- cGCGCGgcGGCAcuucGuCCG-GCgaGUCCGCGc -3'
miRNA:   3'- -CGCGCauCCGU----C-GGCaCGg-UAGGCGU- -5'
24678 3' -59.7 NC_005264.1 + 25715 0.67 0.720326
Target:  5'- gGCGCGggcGGCAGCgGUGCguacucggUCGCGg -3'
miRNA:   3'- -CGCGCau-CCGUCGgCACGgua-----GGCGU- -5'
24678 3' -59.7 NC_005264.1 + 71546 0.67 0.71062
Target:  5'- cCGCcugcuGGCggAGCuCGUGCaCAUCCGCAu -3'
miRNA:   3'- cGCGcau--CCG--UCG-GCACG-GUAGGCGU- -5'
24678 3' -59.7 NC_005264.1 + 59778 0.67 0.709646
Target:  5'- gGC-CGU-GGCuguccacGGCCGUGUCcgCCGCGg -3'
miRNA:   3'- -CGcGCAuCCG-------UCGGCACGGuaGGCGU- -5'
24678 3' -59.7 NC_005264.1 + 16768 0.67 0.70085
Target:  5'- cGCGCGgGGGCGcGCUGUucggGCCGgaCGCAg -3'
miRNA:   3'- -CGCGCaUCCGU-CGGCA----CGGUagGCGU- -5'
24678 3' -59.7 NC_005264.1 + 95965 0.67 0.691025
Target:  5'- cCGC-UAGGUAGCgGU-CCAUCCGUu -3'
miRNA:   3'- cGCGcAUCCGUCGgCAcGGUAGGCGu -5'
24678 3' -59.7 NC_005264.1 + 31785 0.67 0.681153
Target:  5'- gGCGCuucgccuaaGGGCGGCgGUcGCCG-CCGCAg -3'
miRNA:   3'- -CGCGca-------UCCGUCGgCA-CGGUaGGCGU- -5'
24678 3' -59.7 NC_005264.1 + 150811 0.67 0.681153
Target:  5'- gGCGCuucgccuaaGGGCGGCgGUcGCCG-CCGCAg -3'
miRNA:   3'- -CGCGca-------UCCGUCGgCA-CGGUaGGCGU- -5'
24678 3' -59.7 NC_005264.1 + 70569 0.67 0.678184
Target:  5'- gGUGCauuGUAGGCAGCCGUGaaaccugauuugaaCC-UCgGCAu -3'
miRNA:   3'- -CGCG---CAUCCGUCGGCAC--------------GGuAGgCGU- -5'
24678 3' -59.7 NC_005264.1 + 59803 0.68 0.671243
Target:  5'- gGCGCGUAGcGCAccauGCU-UGCCGguagcgCCGCAc -3'
miRNA:   3'- -CGCGCAUC-CGU----CGGcACGGUa-----GGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.