miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24678 3' -59.7 NC_005264.1 + 2573 0.68 0.63038
Target:  5'- -aGCGUcacaugaGGGUGGCCGUGCauaacCCGCGc -3'
miRNA:   3'- cgCGCA-------UCCGUCGGCACGgua--GGCGU- -5'
24678 3' -59.7 NC_005264.1 + 3496 0.66 0.776754
Target:  5'- aCGCGgcgggGGGCAGgggauCCucGCCGUCCGCc -3'
miRNA:   3'- cGCGCa----UCCGUC-----GGcaCGGUAGGCGu -5'
24678 3' -59.7 NC_005264.1 + 3544 0.66 0.739515
Target:  5'- aCGCGgcGGCguccAGCaucucuCGUGCCAcuuccUCCGCGu -3'
miRNA:   3'- cGCGCauCCG----UCG------GCACGGU-----AGGCGU- -5'
24678 3' -59.7 NC_005264.1 + 4498 0.7 0.51352
Target:  5'- gGCGCGgu-GCGGCCGcuUGUguUCCGCGu -3'
miRNA:   3'- -CGCGCaucCGUCGGC--ACGguAGGCGU- -5'
24678 3' -59.7 NC_005264.1 + 5826 0.66 0.74898
Target:  5'- -gGCGgcGGUGGCCGccacucGCCuggCCGCGg -3'
miRNA:   3'- cgCGCauCCGUCGGCa-----CGGua-GGCGU- -5'
24678 3' -59.7 NC_005264.1 + 11648 0.73 0.372951
Target:  5'- aGCGCGgcaGGGCuGCUGUcGUCGUCgCGCAa -3'
miRNA:   3'- -CGCGCa--UCCGuCGGCA-CGGUAG-GCGU- -5'
24678 3' -59.7 NC_005264.1 + 16768 0.67 0.70085
Target:  5'- cGCGCGgGGGCGcGCUGUucggGCCGgaCGCAg -3'
miRNA:   3'- -CGCGCaUCCGU-CGGCA----CGGUagGCGU- -5'
24678 3' -59.7 NC_005264.1 + 21067 0.66 0.74898
Target:  5'- aGCGCGUuGGCcaagccauauGCCGUGCUcgCCu-- -3'
miRNA:   3'- -CGCGCAuCCGu---------CGGCACGGuaGGcgu -5'
24678 3' -59.7 NC_005264.1 + 25715 0.67 0.720326
Target:  5'- gGCGCGggcGGCAGCgGUGCguacucggUCGCGg -3'
miRNA:   3'- -CGCGCau-CCGUCGgCACGgua-----GGCGU- -5'
24678 3' -59.7 NC_005264.1 + 27947 0.66 0.776754
Target:  5'- uGCGCGUcGGUGGUCGUGUCGcuuugggaaaCGCGu -3'
miRNA:   3'- -CGCGCAuCCGUCGGCACGGUag--------GCGU- -5'
24678 3' -59.7 NC_005264.1 + 30643 0.68 0.671243
Target:  5'- aGCGCGUAGGUcGUCGUcGUCGUCguCGUc -3'
miRNA:   3'- -CGCGCAUCCGuCGGCA-CGGUAG--GCGu -5'
24678 3' -59.7 NC_005264.1 + 31785 0.67 0.681153
Target:  5'- gGCGCuucgccuaaGGGCGGCgGUcGCCG-CCGCAg -3'
miRNA:   3'- -CGCGca-------UCCGUCGgCA-CGGUaGGCGU- -5'
24678 3' -59.7 NC_005264.1 + 33989 0.66 0.74898
Target:  5'- cGCGaaCGUGcGGCGGCCcauGUaGCCggCCGCGu -3'
miRNA:   3'- -CGC--GCAU-CCGUCGG---CA-CGGuaGGCGU- -5'
24678 3' -59.7 NC_005264.1 + 34144 0.74 0.320208
Target:  5'- gGCGCGUAGGCuucgGGUCGUGgUA-CCGCGc -3'
miRNA:   3'- -CGCGCAUCCG----UCGGCACgGUaGGCGU- -5'
24678 3' -59.7 NC_005264.1 + 34988 0.66 0.776754
Target:  5'- cGCGCGccGGGUucuagaccGCCG-GCCG-CCGCGg -3'
miRNA:   3'- -CGCGCa-UCCGu-------CGGCaCGGUaGGCGU- -5'
24678 3' -59.7 NC_005264.1 + 36511 0.66 0.739515
Target:  5'- cGCGCGgccucgacgAGGCGGgCGcaggaGCCAUCgGCc -3'
miRNA:   3'- -CGCGCa--------UCCGUCgGCa----CGGUAGgCGu -5'
24678 3' -59.7 NC_005264.1 + 36748 0.66 0.739515
Target:  5'- aGCGCGacGGCgccGGCCGgcGCCGUcgCCGCu -3'
miRNA:   3'- -CGCGCauCCG---UCGGCa-CGGUA--GGCGu -5'
24678 3' -59.7 NC_005264.1 + 37123 0.69 0.611419
Target:  5'- aGgGCG-AGGCGGCCGUcucgGCCucgCUGCu -3'
miRNA:   3'- -CgCGCaUCCGUCGGCA----CGGua-GGCGu -5'
24678 3' -59.7 NC_005264.1 + 42072 0.66 0.749921
Target:  5'- gGCGCGUGGcGuCAGCUGcGCCGggauaucccucgucgUCGCAg -3'
miRNA:   3'- -CGCGCAUC-C-GUCGGCaCGGUa--------------GGCGU- -5'
24678 3' -59.7 NC_005264.1 + 46159 0.66 0.752739
Target:  5'- aCGCGUGuuuguccccuggaucGGCGGCCGccccGCCAUCUaCAa -3'
miRNA:   3'- cGCGCAU---------------CCGUCGGCa---CGGUAGGcGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.