miRNA display CGI


Results 21 - 40 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24678 3' -59.7 NC_005264.1 + 51280 0.65 0.783084
Target:  5'- cGCGCGUuaccacgagcaggaAGGCAcccUCGUGCaCGUCgGCGu -3'
miRNA:   3'- -CGCGCA--------------UCCGUc--GGCACG-GUAGgCGU- -5'
24678 3' -59.7 NC_005264.1 + 51781 0.67 0.720326
Target:  5'- cGCGCGgcGGCAcuucGuCCG-GCgaGUCCGCGc -3'
miRNA:   3'- -CGCGCauCCGU----C-GGCaCGg-UAGGCGU- -5'
24678 3' -59.7 NC_005264.1 + 54211 0.66 0.763917
Target:  5'- uGCGCGggggauacggacGGCGGCCGgUGCguUCaCGCu -3'
miRNA:   3'- -CGCGCau----------CCGUCGGC-ACGguAG-GCGu -5'
24678 3' -59.7 NC_005264.1 + 55616 0.68 0.631379
Target:  5'- cCGCGgcuGGC-GCCGaaUGCCAaCCGCGc -3'
miRNA:   3'- cGCGCau-CCGuCGGC--ACGGUaGGCGU- -5'
24678 3' -59.7 NC_005264.1 + 56520 0.66 0.74898
Target:  5'- cUGUGgagGGGUcGCCcUGCCcgCCGCAg -3'
miRNA:   3'- cGCGCa--UCCGuCGGcACGGuaGGCGU- -5'
24678 3' -59.7 NC_005264.1 + 59778 0.67 0.709646
Target:  5'- gGC-CGU-GGCuguccacGGCCGUGUCcgCCGCGg -3'
miRNA:   3'- -CGcGCAuCCG-------UCGGCACGGuaGGCGU- -5'
24678 3' -59.7 NC_005264.1 + 59803 0.68 0.671243
Target:  5'- gGCGCGUAGcGCAccauGCU-UGCCGguagcgCCGCAc -3'
miRNA:   3'- -CGCGCAUC-CGU----CGGcACGGUa-----GGCGU- -5'
24678 3' -59.7 NC_005264.1 + 65562 0.69 0.581607
Target:  5'- uGCGCG-AGGCAGCggccacuacCGUGCCAaggCCcgGCGg -3'
miRNA:   3'- -CGCGCaUCCGUCG---------GCACGGUa--GG--CGU- -5'
24678 3' -59.7 NC_005264.1 + 68149 0.68 0.641363
Target:  5'- uCG-GUAGGCGGuUCGUGCaaCAUCUGCAu -3'
miRNA:   3'- cGCgCAUCCGUC-GGCACG--GUAGGCGU- -5'
24678 3' -59.7 NC_005264.1 + 68256 0.66 0.767608
Target:  5'- cGCGcCGcGGGCGGCC-UGCUGcugCCGCc -3'
miRNA:   3'- -CGC-GCaUCCGUCGGcACGGUa--GGCGu -5'
24678 3' -59.7 NC_005264.1 + 69404 0.7 0.504043
Target:  5'- gGCGgGUAGGCGcGCC-UGCCG-CCGUc -3'
miRNA:   3'- -CGCgCAUCCGU-CGGcACGGUaGGCGu -5'
24678 3' -59.7 NC_005264.1 + 70569 0.67 0.678184
Target:  5'- gGUGCauuGUAGGCAGCCGUGaaaccugauuugaaCC-UCgGCAu -3'
miRNA:   3'- -CGCG---CAUCCGUCGGCAC--------------GGuAGgCGU- -5'
24678 3' -59.7 NC_005264.1 + 71546 0.67 0.71062
Target:  5'- cCGCcugcuGGCggAGCuCGUGCaCAUCCGCAu -3'
miRNA:   3'- cGCGcau--CCG--UCG-GCACG-GUAGGCGU- -5'
24678 3' -59.7 NC_005264.1 + 71851 0.69 0.601458
Target:  5'- aCGCGUcgcGGCGGCgGUGU--UCCGCGa -3'
miRNA:   3'- cGCGCAu--CCGUCGgCACGguAGGCGU- -5'
24678 3' -59.7 NC_005264.1 + 72205 0.66 0.752739
Target:  5'- cGCGCGcccuucgGGGUugugcguuuaugucgAGCCGUGgCA-CCGCGa -3'
miRNA:   3'- -CGCGCa------UCCG---------------UCGGCACgGUaGGCGU- -5'
24678 3' -59.7 NC_005264.1 + 76303 0.7 0.51352
Target:  5'- gGCGCGgggGGGCuGCUG-GCuCAUUCGCu -3'
miRNA:   3'- -CGCGCa--UCCGuCGGCaCG-GUAGGCGu -5'
24678 3' -59.7 NC_005264.1 + 83231 0.7 0.504043
Target:  5'- uGCGCGUGGGC-GUCuagGCCG-CCGCu -3'
miRNA:   3'- -CGCGCAUCCGuCGGca-CGGUaGGCGu -5'
24678 3' -59.7 NC_005264.1 + 83859 0.73 0.372951
Target:  5'- aGCGCauacGUAGGgcuCGGCCGUGCCGaacUUCGCGc -3'
miRNA:   3'- -CGCG----CAUCC---GUCGGCACGGU---AGGCGU- -5'
24678 3' -59.7 NC_005264.1 + 86226 0.68 0.671243
Target:  5'- uGCuCGUGGGCGGCCGa---GUUCGCAg -3'
miRNA:   3'- -CGcGCAUCCGUCGGCacggUAGGCGU- -5'
24678 3' -59.7 NC_005264.1 + 86703 0.66 0.758347
Target:  5'- cGCGCGc-GGUcuuuGCC--GCCGUCCGCGu -3'
miRNA:   3'- -CGCGCauCCGu---CGGcaCGGUAGGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.