miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24678 3' -59.7 NC_005264.1 + 159936 0.72 0.431294
Target:  5'- aGCGUGacaaGGGUGGcCCGUGCgGUUCGCAg -3'
miRNA:   3'- -CGCGCa---UCCGUC-GGCACGgUAGGCGU- -5'
24678 3' -59.7 NC_005264.1 + 156150 0.69 0.611419
Target:  5'- aGgGCG-AGGCGGCCGUcucgGCCucgCUGCu -3'
miRNA:   3'- -CgCGCaUCCGUCGGCA----CGGua-GGCGu -5'
24678 3' -59.7 NC_005264.1 + 155774 0.66 0.739515
Target:  5'- aGCGCGacGGCgccGGCCGgcGCCGUcgCCGCu -3'
miRNA:   3'- -CGCGCauCCG---UCGGCa-CGGUA--GGCGu -5'
24678 3' -59.7 NC_005264.1 + 153016 0.66 0.74898
Target:  5'- cGCGaaCGUGcGGCGGCCcauGUaGCCggCCGCGu -3'
miRNA:   3'- -CGC--GCAU-CCGUCGG---CA-CGGuaGGCGU- -5'
24678 3' -59.7 NC_005264.1 + 150811 0.67 0.681153
Target:  5'- gGCGCuucgccuaaGGGCGGCgGUcGCCG-CCGCAg -3'
miRNA:   3'- -CGCGca-------UCCGUCGgCA-CGGUaGGCGU- -5'
24678 3' -59.7 NC_005264.1 + 149670 0.7 0.51352
Target:  5'- aGCGCGUAGGUcGUCGUcGUCGUCgucguCGCGa -3'
miRNA:   3'- -CGCGCAUCCGuCGGCA-CGGUAG-----GCGU- -5'
24678 3' -59.7 NC_005264.1 + 138540 0.66 0.767608
Target:  5'- uGCGCGUagccacagAGGCcGCCGUGU---UCGCGa -3'
miRNA:   3'- -CGCGCA--------UCCGuCGGCACGguaGGCGU- -5'
24678 3' -59.7 NC_005264.1 + 135109 0.72 0.397293
Target:  5'- cUGCu--GGguGCCGUGCCGUUCGCc -3'
miRNA:   3'- cGCGcauCCguCGGCACGGUAGGCGu -5'
24678 3' -59.7 NC_005264.1 + 134500 0.66 0.767608
Target:  5'- uCGCGcAGGCaAGUCGUGCCGauaCCGa- -3'
miRNA:   3'- cGCGCaUCCG-UCGGCACGGUa--GGCgu -5'
24678 3' -59.7 NC_005264.1 + 126707 0.67 0.729961
Target:  5'- aGCGCuacGUGGGCaaagaaaucgucGGCCGgcgaguaccaucUGCCAgCCGCGc -3'
miRNA:   3'- -CGCG---CAUCCG------------UCGGC------------ACGGUaGGCGU- -5'
24678 3' -59.7 NC_005264.1 + 126282 0.66 0.74898
Target:  5'- cCGCGgAGGCGGCCaUGCCGcuUUCGg- -3'
miRNA:   3'- cGCGCaUCCGUCGGcACGGU--AGGCgu -5'
24678 3' -59.7 NC_005264.1 + 126123 0.66 0.764841
Target:  5'- uGCGCGgcGGCugAGCCGaUGgCAcuugcgcggcagaaUCCGCc -3'
miRNA:   3'- -CGCGCauCCG--UCGGC-ACgGU--------------AGGCGu -5'
24678 3' -59.7 NC_005264.1 + 124852 0.66 0.74898
Target:  5'- -gGCGgcGGUGGCCGccacucGCCuggCCGCGg -3'
miRNA:   3'- cgCGCauCCGUCGGCa-----CGGua-GGCGU- -5'
24678 3' -59.7 NC_005264.1 + 122571 0.66 0.739515
Target:  5'- aCGCGgcGGCguccAGCaucucuCGUGCCAcuuccUCCGCGu -3'
miRNA:   3'- cGCGCauCCG----UCG------GCACGGU-----AGGCGU- -5'
24678 3' -59.7 NC_005264.1 + 122523 0.66 0.776754
Target:  5'- aCGCGgcgggGGGCAGgggauCCucGCCGUCCGCc -3'
miRNA:   3'- cGCGCa----UCCGUC-----GGcaCGGUAGGCGu -5'
24678 3' -59.7 NC_005264.1 + 119605 0.68 0.641363
Target:  5'- -aGUccAGGCGGCaCGUGCCGcCUGCAu -3'
miRNA:   3'- cgCGcaUCCGUCG-GCACGGUaGGCGU- -5'
24678 3' -59.7 NC_005264.1 + 113053 0.69 0.591519
Target:  5'- aCGCGgAGGUAGuCCGUGCCcUCCu-- -3'
miRNA:   3'- cGCGCaUCCGUC-GGCACGGuAGGcgu -5'
24678 3' -59.7 NC_005264.1 + 110267 1.1 0.00119
Target:  5'- cGCGCGUAGGCAGCCGUGCCAUCCGCAc -3'
miRNA:   3'- -CGCGCAUCCGUCGGCACGGUAGGCGU- -5'
24678 3' -59.7 NC_005264.1 + 107898 0.68 0.671243
Target:  5'- aGCGUGUucAGgagccacucGCAGCCGUucGCCAgcagcgCCGCGa -3'
miRNA:   3'- -CGCGCA--UC---------CGUCGGCA--CGGUa-----GGCGU- -5'
24678 3' -59.7 NC_005264.1 + 107219 0.67 0.729961
Target:  5'- cGCGCGguuGGCAuUCGgcGCCAgCCGCGg -3'
miRNA:   3'- -CGCGCau-CCGUcGGCa-CGGUaGGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.