miRNA display CGI


Results 1 - 20 of 65 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24678 3' -59.7 NC_005264.1 + 110267 1.1 0.00119
Target:  5'- cGCGCGUAGGCAGCCGUGCCAUCCGCAc -3'
miRNA:   3'- -CGCGCAUCCGUCGGCACGGUAGGCGU- -5'
24678 3' -59.7 NC_005264.1 + 107219 0.67 0.729961
Target:  5'- cGCGCGguuGGCAuUCGgcGCCAgCCGCGg -3'
miRNA:   3'- -CGCGCau-CCGUcGGCa-CGGUaGGCGU- -5'
24678 3' -59.7 NC_005264.1 + 155774 0.66 0.739515
Target:  5'- aGCGCGacGGCgccGGCCGgcGCCGUcgCCGCu -3'
miRNA:   3'- -CGCGCauCCG---UCGGCa-CGGUA--GGCGu -5'
24678 3' -59.7 NC_005264.1 + 51280 0.65 0.783084
Target:  5'- cGCGCGUuaccacgagcaggaAGGCAcccUCGUGCaCGUCgGCGu -3'
miRNA:   3'- -CGCGCA--------------UCCGUc--GGCACG-GUAGgCGU- -5'
24678 3' -59.7 NC_005264.1 + 149670 0.7 0.51352
Target:  5'- aGCGCGUAGGUcGUCGUcGUCGUCgucguCGCGa -3'
miRNA:   3'- -CGCGCAUCCGuCGGCA-CGGUAG-----GCGU- -5'
24678 3' -59.7 NC_005264.1 + 65562 0.69 0.581607
Target:  5'- uGCGCG-AGGCAGCggccacuacCGUGCCAaggCCcgGCGg -3'
miRNA:   3'- -CGCGCaUCCGUCG---------GCACGGUa--GG--CGU- -5'
24678 3' -59.7 NC_005264.1 + 156150 0.69 0.611419
Target:  5'- aGgGCG-AGGCGGCCGUcucgGCCucgCUGCu -3'
miRNA:   3'- -CgCGCaUCCGUCGGCA----CGGua-GGCGu -5'
24678 3' -59.7 NC_005264.1 + 2573 0.68 0.63038
Target:  5'- -aGCGUcacaugaGGGUGGCCGUGCauaacCCGCGc -3'
miRNA:   3'- cgCGCA-------UCCGUCGGCACGgua--GGCGU- -5'
24678 3' -59.7 NC_005264.1 + 150811 0.67 0.681153
Target:  5'- gGCGCuucgccuaaGGGCGGCgGUcGCCG-CCGCAg -3'
miRNA:   3'- -CGCGca-------UCCGUCGgCA-CGGUaGGCGU- -5'
24678 3' -59.7 NC_005264.1 + 25715 0.67 0.720326
Target:  5'- gGCGCGggcGGCAGCgGUGCguacucggUCGCGg -3'
miRNA:   3'- -CGCGCau-CCGUCGgCACGgua-----GGCGU- -5'
24678 3' -59.7 NC_005264.1 + 16768 0.67 0.70085
Target:  5'- cGCGCGgGGGCGcGCUGUucggGCCGgaCGCAg -3'
miRNA:   3'- -CGCGCaUCCGU-CGGCA----CGGUagGCGU- -5'
24678 3' -59.7 NC_005264.1 + 107898 0.68 0.671243
Target:  5'- aGCGUGUucAGgagccacucGCAGCCGUucGCCAgcagcgCCGCGa -3'
miRNA:   3'- -CGCGCA--UC---------CGUCGGCA--CGGUa-----GGCGU- -5'
24678 3' -59.7 NC_005264.1 + 34144 0.74 0.320208
Target:  5'- gGCGCGUAGGCuucgGGUCGUGgUA-CCGCGc -3'
miRNA:   3'- -CGCGCAUCCG----UCGGCACgGUaGGCGU- -5'
24678 3' -59.7 NC_005264.1 + 59778 0.67 0.709646
Target:  5'- gGC-CGU-GGCuguccacGGCCGUGUCcgCCGCGg -3'
miRNA:   3'- -CGcGCAuCCG-------UCGGCACGGuaGGCGU- -5'
24678 3' -59.7 NC_005264.1 + 11648 0.73 0.372951
Target:  5'- aGCGCGgcaGGGCuGCUGUcGUCGUCgCGCAa -3'
miRNA:   3'- -CGCGCa--UCCGuCGGCA-CGGUAG-GCGU- -5'
24678 3' -59.7 NC_005264.1 + 68149 0.68 0.641363
Target:  5'- uCG-GUAGGCGGuUCGUGCaaCAUCUGCAu -3'
miRNA:   3'- cGCgCAUCCGUC-GGCACG--GUAGGCGU- -5'
24678 3' -59.7 NC_005264.1 + 71546 0.67 0.71062
Target:  5'- cCGCcugcuGGCggAGCuCGUGCaCAUCCGCAu -3'
miRNA:   3'- cGCGcau--CCG--UCG-GCACG-GUAGGCGU- -5'
24678 3' -59.7 NC_005264.1 + 122571 0.66 0.739515
Target:  5'- aCGCGgcGGCguccAGCaucucuCGUGCCAcuuccUCCGCGu -3'
miRNA:   3'- cGCGCauCCG----UCG------GCACGGU-----AGGCGU- -5'
24678 3' -59.7 NC_005264.1 + 4498 0.7 0.51352
Target:  5'- gGCGCGgu-GCGGCCGcuUGUguUCCGCGu -3'
miRNA:   3'- -CGCGCaucCGUCGGC--ACGguAGGCGU- -5'
24678 3' -59.7 NC_005264.1 + 71851 0.69 0.601458
Target:  5'- aCGCGUcgcGGCGGCgGUGU--UCCGCGa -3'
miRNA:   3'- cGCGCAu--CCGUCGgCACGguAGGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.